Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2207 ATGTCGCCGCCGGGGCTCCCTGCTGCTGGACCCTCCGATTTCTACGGCGCAGCAACCGGATTCCCTACTCAATCCATGGCAGTTCCACCCACCATCAACAACCACCCCGCCACCACTCACCAGTCTCTCTACCCATCCCAAAAACCTTCAATTATGCTTCATCCCTCCTCCCACATACCCAAACACCAAACATCCTCTCTCACCGGGAAACGCACCCTCGCAGAATTCCAGACCCACAACCTCAGTAACACCATCAGCAACAATCTTCTTGTTAGCAACAACAATAACCAACTCCTTACCAACTATCAATTTCGTTCGGTAAAACCCAGAACTTTTCAACACAACCAATTCTCCACGTTCTCTCCTGAATTCTCTCCTGAATTATCTGCCTTACCGTCTCACCGTTACGGGGCTTCCCTTCTCCACCACATTCGCCCTAACTATGTCAACGCACAACCTGTCACGACTTCGATCCTGTCTCACACAAATTTCTCTCCTGTTCAAAGCAGGTTAGCCGCGACCCGTGAAATGGAAAAAAACTTGATAGACCACCGCCTCCAGGAGTTGGAAAAAGAGCTTCTAGAAGACAATGATGATGACCAAGGCGACGCTGTTTCAGTCGTTACCACCTCTGAATGGTCACACACAATACAGAACTTAATCACTCCGCCCAAACATGTCTCGTCATCGCCCTCTTCCTCTACGACGTCGTCCAACTCCTCAGCAGAATCCATCAGTGTCATACAGTCCCTAACGGAGGTAGCGAAAGCGATTTCAGAAGGGAGAGTCGAGGTCGCCACGCAGATCCTTACCCGATTGTCGCAGAATTCGGATCAAGGCTTCGTAAATTGCATGGTTTCCGCGCTCAAATCGCGGATGAGTCATGTTGAGTATCCACCACCTGTTGAGGAATTGTTCGGCAGGGAACACACCGAGTCCACTCAGTTGCTATTTGAGCACTCGCTCTTCTTTAGGGTCGCGCTCATGGTCGCCAACATCGCAATCCTCGAATCTGCATTCGAAAATAAAACAGAGAACCCCAAACTCTGCGTGGTGGATTTCGACATCGGGAACGGGAAACAATACGCCAGCCTTCTCCACGAGCTCTCTTTGCGGCGAAAGGGTTCTCCAGCCGTCGTCAAGATCATCGCCGTTACGGAGAACAGCGCTGATGAGAAGATGAGTTCCGCCGGCGTGATGCTAGGAAGACTCGCAGAGCAACTCGGGATTGGTTTCAAATTCAAAGTGCTGACTCGGAGAATCGCCGAGTTGACTCGTGAGTCTTTGGGTTGCGACGCGGACGAGGTACTGGCGGTGAACTTCGCTTTCAGGCTTTACAAAATGCCCGACGAGAGTGTCTCCACAGAGAACCCGCGCGACGAACTTTTGCGGCGCGTGAAGACACTCGCGCCGCGCGTGGTGACGCTGGTGGAGCAGGAGTCGAACACCAATACGGCGCCATTCGTGGCTCGCGTGGCCGAGTCGTGCGCCTATTACGGCGCGCTGTTTGACTCGCTCGAGACTACGATGGCACGGGAAAACTCGTGGCGAATAAAAATGGAGGAGGGACTGAGTCGGAAGATAGCAAACACGGTGGCATGCGAAGGAAGGGAGCGCGTAGAAAGGTGCGAGGTGTTTGGAAAGTGGCGCGCGCGCATGGACATGGCTGGTTTCAGGTTGAAACCACTGAGTCAGAGAGTGGCCGAGTCAATCAAAGAACGACTCGGTGGTGAGAACCGGGTGACAGTTAAAGTAGAAAAGGGTGGGATTTGCTTTGGGTGGATGGGAAGAACCCTGACCGTGGCTTCTGCTTGGTGTTAA 1821 0.5266 MSPPGLPAAGPSDFYGAATGFPTQSMAVPPTINNHPATTHQSLYPSQKPSIMLHPSSHIPKHQTSSLTGKRTLAEFQTHNLSNTISNNLLVSNNNNQLLTNYQFRSVKPRTFQHNQFSTFSPEFSPELSALPSHRYGASLLHHIRPNYVNAQPVTTSILSHTNFSPVQSRLAATREMEKNLIDHRLQELEKELLEDNDDDQGDAVSVVTTSEWSHTIQNLITPPKHVSSSPSSSTTSSNSSAESISVIQSLTEVAKAISEGRVEVATQILTRLSQNSDQGFVNCMVSALKSRMSHVEYPPPVEELFGREHTESTQLLFEHSLFFRVALMVANIAILESAFENKTENPKLCVVDFDIGNGKQYASLLHELSLRRKGSPAVVKIIAVTENSADEKMSSAGVMLGRLAEQLGIGFKFKVLTRRIAELTRESLGCDADEVLAVNFAFRLYKMPDESVSTENPRDELLRRVKTLAPRVVTLVEQESNTNTAPFVARVAESCAYYGALFDSLETTMARENSWRIKMEEGLSRKIANTVACEGRERVERCEVFGKWRARMDMAGFRLKPLSQRVAESIKERLGGENRVTVKVEKGGICFGWMGRTLTVASAWC* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2207 606 MobiDBLite consensus disorder prediction 219 242 - -
Vra8g2207 606 Pfam GRAS domain family 248 605 IPR005202 -
Vra8g2207 606 ProSiteProfiles GRAS family profile. 238 606 IPR005202 -
Vra8g2207 606 PANTHER SCARECROW-LIKE PROTEIN 8 62 606 IPR030013 -
Vra8g2207 606 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 62 606 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2207 Vra-Chr8 40394421 40396917 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2207 33 605 GRAS Transcription Factor Family AT5G52510 45.483 6.82e-144 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra8g2207 GRAS 4.3e-91 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2207 - - vra:106769615 1120.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2207 8 40394421 40396917 Vra8g2207 8 40394421 40396917 ECH