Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2204 ATGAACACCTTATTCCTCATACCCTCTATCCTTCTCCTTCTCCTTCTCACACCCTTCTCAGTTTCATTCTCCCCCACAGATAACTTCCTTCTCAGTTGTGGATCACACAACAATGTTTCCCTCTTCAACAGAGTCTTCACGGGCGATTCCACCAACCCAAGTTCCAATTTTCTCTCTTCAGGTGATTCTGTTTCACTCGCATATCAAAAGCCACCTCAGAATTTGCCCACTTTGTACCACACAGCAAGAGTTTTCAGCAGAGGTGGGAGCTACAGGTTCAATATGAAGAAAAACGGCACCCACTTTGTTCGTTTTCATTTCTCCCCCTTCAAGGCTCAAAGTTTTGATCTAAAATCAGCAAACTTTAGTGTCTTTGTTAATGGGGCTTCGGTGCTGAGCAATTTCCAGCCACCTAATGATGTTCTTCTCAAAGAGTTCATTCTAAACATAGAGTCAAACATTCTTGAGATTTTGTTTAGGCCTGTTGCTGACTCAGGTTTTGCCTTTGTCAATGCTTTGGAGGTGTTTACTGCCCCTGTGGATTTTATCATAGATTTTGGAGCCAGGGCAGTTGGTCCTTCTGGGGTGGAAGAGTACCGAAACCTTTCATCTATGGTTTTGGAAACTGTTCATAGGATCAATGTTGGGGGTTTGAAAATAACTCCTTTCAATGACACCCTTTGGAGGACTTGGATTCCTGATGAGGATTATTTGGTGTTTAAGGGTGCAGCAAAGCCTGCAGTGAGCACTCACATACCAAATTACCAGAAGGGAGGTGCAACTAGAGAGATTGCACCTGAAAATGTTTACATGACTGCTCAGCAGATGAATAGGGAAAACTCAAGTTTGGCTTCTAGGTTCAACATAACCTGGAACTTCCCTGTGTCTCCTGGTGGTGTTCCACACTTGGTTCGATTGCATTTCTGCGATATTGTTAGTCCTGCTCTCAACTTGCTCTACTTTGATGTGTACATCAATGGGTACATTGCATACAAGGATCTTGATTTGTCAGCGCTTACCATCCACACTCTTGCATCACCTGTCTATGTGGATTTTGTTACAAATTCAGATGACTCGGGTTTTGTTCAAGTGAGTGTTGGTCCTTCTGAGCTAAGCAGTTCCATAAGGATGAATGCAATATTGAATGGTGCAGAGATAATGGAGATGCTCAATGATGTCCGTACTAAAGTTGTGCATAGGAGGAAGAATTTGTGGGTGTTGGTGGGTTCAGTTGTTGGAGGAATTGCTGTCTTTTTTTTAGTTGTAACTGCTTTTCTACTTGGTACCAAATGCAGGAACAAGAAACCAAAACAAAGGACATTGGAAAGTGTTGGATGGACACCTTTAAGCATGTTTGGAGGGAGTTCACTCAGTAGAAGCTCCGAGCCTGGTTCACACGGACTTCTTGGCTTGAAGATTCCTTTTGCTGAAATAAAATCGGCAACAAACAACTTCGATAGAAATTTGATTATAGGGTCTGGTGGGTTTGGTATGGTCTACAAAGGAGTGTTCAGAGACAATACGAAGGTTGCTGTCAAGAGAGGCATGCCAGGGTCCAGACAAGGCCTTCCCGAGTTCCAAACTGAGATAACTGTTTTGTCCAAAATTCGCCATCGCCACCTTGTTTCACTGGTTGGTTTCTGTGAAGAAAATTCAGAAATGATACTTGTCTATGAGTATGTTGAAAAGGGTCCGCTGAAGAAGCATTTATATGGCTCATCACGACAAACACCTCTCTCTTGGAAGCAGCGTCTTGAAATATGCATTGGTGCAGCCAGAGGTCTTCACTATCTTCACACTGGCTTTGCTCAAGGAATCATCCACCGTGACATTAAATCAACCAACATATTGCTTGATGAAGACTACGTGGCCAAGGTTGCTGACTTTGGTCTTTCAAGGTCAGGACCATGCATCGATGAAACACATGTGAGTACTAATGTGAAAGGTAGTTTTGGTTATCTTGATCCTGAGTATTACCGGAGACAGCAGCTTACGGATAAGTCAGATGTTTATTCATTTGGTGTAGTGCTTTTTGAGGTTCTTTGTGGCAGACCTGCTGTTGATCCACAATTAGCAAGAGAACAGGTCAATTTGGCAGAATGGGCACTTGAATGGCTGAAGAAAGGCATGCTGGACAAAATTGTTGACCCCCATCTTGTTGGACAAATCCAACAAGAATCCTTAAAAAAATTTTGTGAAACTGCAGAGAAGTGTTTGTCTGAGTATGGAGTCGATAGACCAGCTATGGGTGATGTCTTATGGAATTTGGAGCATGCACTTCAGCTCCAAGAAAGTGGACAACAAAGGGAACCACATGCCAACAGCAGTGCTAGTGAAGCTGCAAGTTTGACCAGTACAGTTATTCCTGGAAATCCTTCTACCAACACAGGAGCAGAGAGGGATTATGATAATTTTTCTTCTGATGTTAGTACTAGCCAAGTGTTTTCCCAGCTAATGAACAACGAAGGTAGATAG 2475 0.4291 MNTLFLIPSILLLLLLTPFSVSFSPTDNFLLSCGSHNNVSLFNRVFTGDSTNPSSNFLSSGDSVSLAYQKPPQNLPTLYHTARVFSRGGSYRFNMKKNGTHFVRFHFSPFKAQSFDLKSANFSVFVNGASVLSNFQPPNDVLLKEFILNIESNILEILFRPVADSGFAFVNALEVFTAPVDFIIDFGARAVGPSGVEEYRNLSSMVLETVHRINVGGLKITPFNDTLWRTWIPDEDYLVFKGAAKPAVSTHIPNYQKGGATREIAPENVYMTAQQMNRENSSLASRFNITWNFPVSPGGVPHLVRLHFCDIVSPALNLLYFDVYINGYIAYKDLDLSALTIHTLASPVYVDFVTNSDDSGFVQVSVGPSELSSSIRMNAILNGAEIMEMLNDVRTKVVHRRKNLWVLVGSVVGGIAVFFLVVTAFLLGTKCRNKKPKQRTLESVGWTPLSMFGGSSLSRSSEPGSHGLLGLKIPFAEIKSATNNFDRNLIIGSGGFGMVYKGVFRDNTKVAVKRGMPGSRQGLPEFQTEITVLSKIRHRHLVSLVGFCEENSEMILVYEYVEKGPLKKHLYGSSRQTPLSWKQRLEICIGAARGLHYLHTGFAQGIIHRDIKSTNILLDEDYVAKVADFGLSRSGPCIDETHVSTNVKGSFGYLDPEYYRRQQLTDKSDVYSFGVVLFEVLCGRPAVDPQLAREQVNLAEWALEWLKKGMLDKIVDPHLVGQIQQESLKKFCETAEKCLSEYGVDRPAMGDVLWNLEHALQLQESGQQREPHANSSASEAASLTSTVIPGNPSTNTGAERDYDNFSSDVSTSQVFSQLMNNEGR* 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2204 824 ProSitePatterns Serine/Threonine protein kinases active-site signature. 606 618 IPR008271 GO:0004672|GO:0006468
Vra8g2204 824 Gene3D - 206 391 - -
Vra8g2204 824 Gene3D - 28 181 - -
Vra8g2204 824 ProSiteProfiles Protein kinase domain profile. 485 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2204 824 PANTHER OS07G0166700 PROTEIN 16 789 IPR045272 GO:0004714|GO:0006468
Vra8g2204 824 MobiDBLite consensus disorder prediction 763 824 - -
Vra8g2204 824 Gene3D Phosphorylase Kinase; domain 1 458 560 - -
Vra8g2204 824 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 16 789 - -
Vra8g2204 824 Pfam Protein tyrosine and serine/threonine kinase 490 685 IPR001245 GO:0004672|GO:0006468
Vra8g2204 824 ProSitePatterns Protein kinases ATP-binding region signature. 491 513 IPR017441 GO:0005524
Vra8g2204 824 Gene3D Transferase(Phosphotransferase) domain 1 561 783 - -
Vra8g2204 824 SUPERFAMILY Protein kinase-like (PK-like) 473 754 IPR011009 -
Vra8g2204 824 CDD STKc_IRAK 491 757 - -
Vra8g2204 824 SMART serkin_6 485 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2204 824 Pfam Malectin-like domain 31 388 IPR024788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2204 Vra-Chr8 40371970 40375850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2204 3 824 Receptor kinase-like Gene Family AT3G46290 48.399 0.0 733
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vra8g2204 Malectin_like 4.3e-34 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2204 - - pvu:PHAVU_007G074000g 1516.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2204 8 40371970 40375850 Vra8g2204 8 40371970 40375850 ECH