Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2199 ATGGTATCTAGAAACTCCAACCCTTCAGAGGCTTTCCACATGGACCCTTCTGCCATGTCGCTCCCCGGAATACTCCCTTTTGCCGCCGCTACCGGTGCCGATTCCCTTGAGGACCCTGCTAAGAAGACTCGCAAACCTTACACTATCACCAAGTCTAGGGAGAGTTGGACCGAACCCGAGCACGACAAGTTCCTCGAAGCTCTTCAGCTATTTGACCGTGACTGGAAAAAAATTGAAGCATTTGTTGGATCAAAGACAGTTATCCAGATAAGAAGCCATGCTCAGAAATACTTTCTAAAAGTTCAGAAGAATGGGACAAGTGAACATCTTCCTCCACCCAGACCAAAAAGAAAAGCTGCTCATCCATACCCTCAGAAAGCTTCAAAAAATGTTCCAGTGCTCTCACAAGTATCAGGAGGATCCTTACAATCATCATCGGCTTTGATTGAACCAGGTTACATAATGAAGCGTGATTCTTCAGCAATGCTTAAAACTCCTATTATTAAAGCTGCAGCGTCTTCCTGGTCAAACAATTCTCTGCAGAAAAGCACCAATTTATTGCATGGCCACAAAGTGAATAATTGTTGCAGTAACAATGAAAGTCCCAGAGGACAGTTGGTTGGTGAATCTAATGGTCAAGGGAATAATATCCATCCATTGAGAATTCTTCCAGATTTTGGTCAAGTATACAGCTTCATTGGCAGTGTATTTGATCCAAATGTAACTGGACATCTGCAGAAACTGAAACGAATGGATCCTATAGATGTTGAGACAGTGCTATTGTTGATGAGAAACCTGTCTATCAATTTAGTAAGCCCAGATTTTGAGGACCATAGAAGGCTGCTTGCATCATATGAGGTGGAACCTGAGTCAGATAACTATTATATCAACGCAGATCGAAACATGCTTGAAGGGTAG 918 0.4281 MVSRNSNPSEAFHMDPSAMSLPGILPFAAATGADSLEDPAKKTRKPYTITKSRESWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHLPPPRPKRKAAHPYPQKASKNVPVLSQVSGGSLQSSSALIEPGYIMKRDSSAMLKTPIIKAAASSWSNNSLQKSTNLLHGHKVNNCCSNNESPRGQLVGESNGQGNNIHPLRILPDFGQVYSFIGSVFDPNVTGHLQKLKRMDPIDVETVLLLMRNLSINLVSPDFEDHRRLLASYEVEPESDNYYINADRNMLEG* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2199 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 48 102 IPR017930 -
Vra8g2199 305 MobiDBLite consensus disorder prediction 103 128 - -
Vra8g2199 305 SUPERFAMILY Homeodomain-like 47 103 IPR009057 -
Vra8g2199 305 CDD SANT 55 98 IPR001005 -
Vra8g2199 305 Pfam Myb-like DNA-binding domain 53 98 IPR001005 -
Vra8g2199 305 Gene3D - 56 103 - -
Vra8g2199 305 ProSiteProfiles SANT domain profile. 51 104 IPR017884 -
Vra8g2199 305 PANTHER PROTEIN REVEILLE 6 13 294 - -
Vra8g2199 305 PANTHER SWI/SNF COMPLEX-RELATED 13 294 - -
Vra8g2199 305 SMART sant 52 100 IPR001005 -
Vra8g2199 305 ProSiteProfiles Myb-like domain profile. 48 98 IPR001005 -
Vra8g2199 305 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 51 100 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2199 Vra-Chr8 40345092 40348675 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra8g2199 Myb_DNA-binding 3.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2199 - - gmx:100794389 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2199 8 40345092 40348675 Vra8g2199 8 40345092 40348675 ECH