Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2193 ATGGATGAGGACTGGGATCTCTTTGCCGTCGTCAGAAGCTGCCAATCAACTAACAATACTTCCACCACAGCAATTCCAGAAACCACCACCAATACTACTTCATCTTCTCTCCTCACTTCCCTTCTCAAGGAAGACAGATACGATGCATTTTCCTTTCCCAATACAATCCAACCCATAACAAATGAATTTCACCAGTTACACCAATTCTTTTCACCCTTTAACCCCACCACCACCAACGCCACTACCCTCAGTGCTCCTCGCATCAATCCTAATTCCCCTTATTTTGCCCAACAGGAAACCCAGCAAATCAGTGATCACCTTCCCATTTTGCCTCATTTTCTGCCAGAACCCTCCACTCCCAGTTTTAATAGATTCCCTGACCATCAACAACAGCAACAGAATCAACTACAGTTACTTCAGAAACAGGAATTTCATACATCCCAGAACAATTCACCCACAGTTTCACCCAACACACAACCTCAAACACCCAAATCAAGAAAAAGAAAAAGCCAACAGAAGAAAATGGTGTGCCAGGTAACCGCAGATAAACTCTCAGCAGATTTGTGGGCATGGCGAAAATACGGACAAAAACCAATTAAGGGTTCTCCGTATCCAAGGAATTACTATAGATGTAGCAGCTCCAAAGGTTGTATGGCTCGAAAACAAGTTGAACGGAGTAACACCGAAACCGATGTGTTCATTGTTACGTACACCGGAGACCACTCGCATCCCCGGCCAACCCACCGGAACTCGCTCGCCGGAAGTACCCGAAGTAAAAATCCGACGACGAATCCGCCGCCTTTATCCGGGTCACTCTCCTTCCAATCCGCCCCCTTTTCTTCTTCTTCTTCTTCTTCTCCACCACTCTCTCCAACGTCGCCGTCGGAAGATCCACCGGAAGCCGGCGATGTTGAACCTGACCTGGACATGGAAACCGACATGGACGATGACGGTGACATCCGATGA 966 0.4731 MDEDWDLFAVVRSCQSTNNTSTTAIPETTTNTTSSSLLTSLLKEDRYDAFSFPNTIQPITNEFHQLHQFFSPFNPTTTNATTLSAPRINPNSPYFAQQETQQISDHLPILPHFLPEPSTPSFNRFPDHQQQQQNQLQLLQKQEFHTSQNNSPTVSPNTQPQTPKSRKRKSQQKKMVCQVTADKLSADLWAWRKYGQKPIKGSPYPRNYYRCSSSKGCMARKQVERSNTETDVFIVTYTGDHSHPRPTHRNSLAGSTRSKNPTTNPPPLSGSLSFQSAPFSSSSSSSPPLSPTSPSEDPPEAGDVEPDLDMETDMDDDGDIR* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2193 321 MobiDBLite consensus disorder prediction 122 165 - -
Vra8g2193 321 ProSiteProfiles WRKY domain profile. 180 246 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra8g2193 321 MobiDBLite consensus disorder prediction 111 177 - -
Vra8g2193 321 SUPERFAMILY WRKY DNA-binding domain 182 246 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra8g2193 321 Pfam WRKY DNA -binding domain 187 244 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra8g2193 321 MobiDBLite consensus disorder prediction 236 321 - -
Vra8g2193 321 SMART WRKY_cls 185 245 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra8g2193 321 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 308 IPR044810 GO:0003700
Vra8g2193 321 MobiDBLite consensus disorder prediction 248 290 - -
Vra8g2193 321 PANTHER WRKY TRANSCRIPTION FACTOR 27-RELATED 3 308 - -
Vra8g2193 321 Gene3D WRKY domain 168 239 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra8g2193 321 MobiDBLite consensus disorder prediction 300 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2193 Vra-Chr8 40305918 40308043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2193 164 310 WRKY Transcription Factor Family AT5G52830 61.224 1.02e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra8g2193 WRKY 9.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2193 K13425 - gmx:100792164 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0524 9 5658663 5660286 Vra8g2193 8 40305918 40308043 ECH
Vra4g0815 4 15092313 15094302 Vra8g2193 8 40305918 40308043 ECH
Vra8g2193 8 40305918 40308043 Vra8g2193 8 40305918 40308043 ECH