Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2190 ATGGAACACCAATCATCGCCACCGCCTCCGCCTCCGCCTCCGCCTCCGCCATCAACTTCGCCACCACCACAACCACCCAAAACCTACACACTAACCGCCACCTCAATATGCTACACCAAATCCTCCTCCTCCAAACTTCCTCCCTTCTTCAACCATTGCACCACCACCCCTCCAGCTTACATCCTCAAGGACGTCTCCCTCACCGCCCACCCTTCCCAAATCCTCGCCGTCGTTGGCCCCAGCGGCGCCGGGAAGTCCACCCTCCTGGACATTCTCGCCGCCCGAACCCTCCCCTCCCACGGCACCCTCTCCGTCAACTCCTCCCCTCTCCTCCCCTCCTCCTTTCGCAAGCTCTCCTCCTACGTCCCCCAACACGACCACTCCCTCCCTCTCCTCACCGTCTTCGAAACCTTCCTCTTCGCCGCCACCCTCCTCAAACCCTCCGCCCCCGACCTCCGTGCCCTCGTCTCCCAACTCCTTTCCCAACTGCGCCTCTCCCATCTTGCCCACACGCGCCTCGCCCACGGCCTCTCCGGCGGAGAACGAAGAAGGGTCTCCATCGGTCTCAGCCTCCTCCACGATCCTGCCGTTTTACTCCTAGACGAACCCACTTCGGGGCTTGACAGCACTTCCGCCTTCAAAGTCATGCAGATTCTCAAACAAACTTGCCTCTCTCGCAACAGAACCATCATCCTCTCCATCCACCAACCCAGCTTCAAGATCCTCTCCTGCATTGACAGGATCTTGCTGCTTTCCAAAGGAACCGTCGTTCATCATGGAACCGTTGCCACCTTACAGGGCTTCTTGCACTCCAATGGCTACACCGTCCCTCAGCAACTCAATGCCTTGGAATACGCCATGGAGATTTTGAATGAGGTTAAGCCTCTCACTCCACCCAGTCTTCAAGAGTCGCCCGAAAGTTCAAGTTCACTAAATTTGGTTCCTGGCGGTGGACGATCAGGGAGCAGTAGAGAGAGCATCATGTATAAAAGCTCTAGGGTGCACGAGATTTTCACTCTTTACGTCAGATTTTGGAAGATTATTTACCGAACAAGGCAACTTCTTCTGACCAACACTGCCGAAGCGCTTCTCGTGGGGCTTGTGTTGGGAACAATTTATATCAACATAGGTTTTGGAAAAGAAGGGATCGAGAAAAGGTTTGGTCTGTTTGCTTTCACTCTCACGTTTCTCTTATCTTCCACCACCGAAACCCTTCCCATCTTCATCAACGAGAGGCCTATCGTATTAAGAGAAACTTCAAGTGGGGTTTATAGGCTCTCTTCTCATCTCATTGCAAATACGCTTGTTTTCTTGCCCTACTTGTTCGTTGTTGCTGTTATATATTCTATCCCGGTTTACTTCTTAGTTGGCCTCTGTGCTTCATGGCTTTCTTTTGCTTACTTTGTTCTGGTCATTTGGGTCATAGTTCTCATGGCAAATTCCTTCGTGCTCTTCTTGAGCTCTCTTGCACCCAACTACATTGCCGGAACTTCCCTCTTGACGGTGCTTCTGGCAGCGTTTTTTCTTTTCTCTGGTTACTTTATCTCCAAGGATAGCTTGCCCAAGTACTGGCTTTTCATGCACTTCTTATCCATGTACAAATACGCTCTTGACGCTCTTCTCATCAACGAGTACTCGTGCTTGGTGTCAAAGTGTTTGATATGGTATCAAGAGAATGAACAGTGCATGATCACTGGCGCTGACGTGCTACAGAAGAGAGGGCTCAAAGAGAGTGAAAGGTGGACCAACGTGTACATCTTGATCGGCTTCTTTGTACTGTATCGTTTGCTTTGCTTCTTGGTTTTGATTCGGAGGGTGTCGAGATCCAAAACATAA 1836 0.5125 MEHQSSPPPPPPPPPPPSTSPPPQPPKTYTLTATSICYTKSSSSKLPPFFNHCTTTPPAYILKDVSLTAHPSQILAVVGPSGAGKSTLLDILAARTLPSHGTLSVNSSPLLPSSFRKLSSYVPQHDHSLPLLTVFETFLFAATLLKPSAPDLRALVSQLLSQLRLSHLAHTRLAHGLSGGERRRVSIGLSLLHDPAVLLLDEPTSGLDSTSAFKVMQILKQTCLSRNRTIILSIHQPSFKILSCIDRILLLSKGTVVHHGTVATLQGFLHSNGYTVPQQLNALEYAMEILNEVKPLTPPSLQESPESSSSLNLVPGGGRSGSSRESIMYKSSRVHEIFTLYVRFWKIIYRTRQLLLTNTAEALLVGLVLGTIYINIGFGKEGIEKRFGLFAFTLTFLLSSTTETLPIFINERPIVLRETSSGVYRLSSHLIANTLVFLPYLFVVAVIYSIPVYFLVGLCASWLSFAYFVLVIWVIVLMANSFVLFLSSLAPNYIAGTSLLTVLLAAFFLFSGYFISKDSLPKYWLFMHFLSMYKYALDALLINEYSCLVSKCLIWYQENEQCMITGADVLQKRGLKESERWTNVYILIGFFVLYRLLCFLVLIRRVSRSKT* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2190 611 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 44 278 IPR003439 GO:0005524
Vra8g2190 611 MobiDBLite consensus disorder prediction 1 30 - -
Vra8g2190 611 Pfam ABC-2 type transporter 235 293 IPR043926 GO:0140359
Vra8g2190 611 PANTHER ABC TRANSPORTER G FAMILY MEMBER 8 15 606 - -
Vra8g2190 611 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 15 606 - -
Vra8g2190 611 SMART AAA_5 71 255 IPR003593 -
Vra8g2190 611 MobiDBLite consensus disorder prediction 1 28 - -
Vra8g2190 611 MobiDBLite consensus disorder prediction 297 324 - -
Vra8g2190 611 SUPERFAMILY Formin homology 2 domain (FH2 domain) 7 17 - -
Vra8g2190 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 269 IPR027417 -
Vra8g2190 611 Gene3D - 49 294 IPR027417 -
Vra8g2190 611 Pfam ABC-2 type transporter 336 545 IPR013525 GO:0016020|GO:0140359
Vra8g2190 611 ProSitePatterns ABC transporters family signature. 177 191 IPR017871 GO:0005524
Vra8g2190 611 Pfam ABC transporter 62 205 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2190 Vra-Chr8 40290923 40293104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2190 55 324 Calmodulin-binding Proteins AT2G36910 27.622 2.02e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2190 K05681 - gmx:100790712 913.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2190 8 40290923 40293104 Vra8g2190 8 40290923 40293104 ECH