Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2186 ATGGAACAGAAACACGTGTTGTTGTCAGCATTGAGTGTTGGGGTGGGATTGGGTGTAGGACTTGGATTGAGTACAGGACAGGCTGTTCAAAAATGGGTGGGAGGGAGTTGTGAATCAGATGAGATTTCTGGGGAGCAAATTGTGCTGGAGCTGAACAACAAAGTCATTGATGGGAAGAACAGCAAAACCACATTTGATGAGTTTCCTTATTACTTAAGTGAAAGAGTCCGATTTTCGTTAACAAGTGCTGGATATGTTTATTTGAAACAAGACTTTTCCAAGCACATGAGGAACCTTTGTCCAGCAAGCAGAGCTATGTTGCTTTCTGGACCTGCAGAACTTTATCAGCAAAAGGTTGCCCAAGCTTTAGCTCAGTGCTTTGGATCGAAGTTACTGTTGCTAGACATAATTGACTTCTCCTTGGAGATGCAGAGGAAATATGGATGTCCCAGAAAAGAACCGTATTTTAAAAGGTCCATTTCTGAGGTGACTTTGGAGCGAGTGTCGGGTTTGTTTGGATCCTTTCCAATCCTCTCTTCAACTAGCAGAACCAGAGGTACATTACTTCGACAGAGTAGTGAAATTGAAAATTCCAGCAATCCTCTGAAACTTTGTAGGAATGCCTCTAGTGCATGTGATACGATTAGCTCTTCTCAATGTGATCAATCAGATCCAGCTCCTTTGAAGGGCACAAGCGGCTTCTGTTTTGATGAAAAGCTCTTCGTGCAATCACTTTATAAGGTCCTGGTTTCTATCTCGGAAACCAGTTCAATTATTTTATACATCAAGGATGTTGAGAAGCTCTTTGTTCGATCACCAAGGCTACACAATTTGTTCCAAAAGCTAATAAAGAAACTTTCAGGACCAGTACTAATACTCGGTTCGCAGATATTTGATTATGAAAATGATCCCGAAATTGATGACAAGCTCACTATGTTATTCCCTTACATCATTGAGATCAAACCACCTCAAAAAGACAGCCATCTTGCAAGCTGGAAAACCAAACTGAAAGAGGACACGAAAACAATTCTGTTTCAAGATAGCAGAAACTACATTGCTGAAGTACTTGCAGCAAGTGACATTGATTGTGATGACTTGAATTCCGTCTGCCATGCTGACACTATGCTACTCAGTAGTTGCATTGAAGAGATTGTGGCAGCTGCAGTTTCTCACCACCTAACAGAGACTAAAGATCCAGAATACCGAAATGGAAAATTAGTTATATCAGCCAAGAGTTTGTCCTATGTATTGAGTTTGTTCCAGGAAAGTGAAAGTAATTCGGAGACCAAAGATTCAAACAAGGATGTTCCTCCTGACAACGAGTATGAGAAGCGCATGAGAGCAGATGTTGTGCCTGCAAAAGAGATAGGAGTTAGATTTGAAGATATTGGTGCATTGGATGATATTAAAGAAATACTTCAAGATGAAGTTCTACTTCCCCTCAGAAGGCCAGATTTATTCAATGGTGGCCTTTTGAAGCCTTATAAAGGTATATTGCTTTTTGGGCCTCCTGGCACAGGAAAAACAATGCTTGCAAAGGCAATTGCAAATGAAGCTGGAGCAAGTTTCATCAATGTCTCAATATCGACCATCACTTCAAAATGGTTTGGAGAAGATGAAAAGAATGTCCGAGCTCTGTTTTCACTAGCTGCAAAGGTTGCTCCAACTATTATTTTTATTGATGAGGTTGATAGCATGCTTGGGCAACGGACTAAGTCTGGGGAGCATGAGGCAATGAGAAAGATTAAAAATGAATTCATGGTCCACTGGGATGGGCTATTGTCAAAACCTGGTAAGCGAATTCTGGTTCTTGCTGCAACTAACAGGCCATATGACCTTGATGAAGCAATTATAAGACGGTTTGAGCGCAGGATCATGGTTGGTATTCCATCTGCTGAAAACAGGGAAATGATCTTGAAAACTCTCCTAGCTAAGGAAAAATATGAAAATATTGACTTTAAAGAGCTTTCAATCATGACAAAAGGATATACTGGAAGTGATCTTAAGAATTTGTGCACGGCTGCTGCTTATCGACCTGTTAGAGAGCTACTACGACAGGAAAGGATTAAGGAAAATAAGAAAAAGGAGGCAGCAGTTCAAAGCTCAGAAAGTGCATCTGATGCTAAAGAAGATAAAGAAAACCGAGTTATTACTTTGAGACCTATTAACATGGATGACATGAGACAGGCAAAGACTCAGGTGACTGCTAGTTATGCAGCAGAAGGATCAATAATGAGTGAGCTTGAGGAGTGGAATGATTTATTTGGAGAAGGAGGTTCAAGGAAGAAGAAGCAGGAGCAGCTTACTTATTTTCTTTAG 2319 0.4058 MEQKHVLLSALSVGVGLGVGLGLSTGQAVQKWVGGSCESDEISGEQIVLELNNKVIDGKNSKTTFDEFPYYLSERVRFSLTSAGYVYLKQDFSKHMRNLCPASRAMLLSGPAELYQQKVAQALAQCFGSKLLLLDIIDFSLEMQRKYGCPRKEPYFKRSISEVTLERVSGLFGSFPILSSTSRTRGTLLRQSSEIENSSNPLKLCRNASSACDTISSSQCDQSDPAPLKGTSGFCFDEKLFVQSLYKVLVSISETSSIILYIKDVEKLFVRSPRLHNLFQKLIKKLSGPVLILGSQIFDYENDPEIDDKLTMLFPYIIEIKPPQKDSHLASWKTKLKEDTKTILFQDSRNYIAEVLAASDIDCDDLNSVCHADTMLLSSCIEEIVAAAVSHHLTETKDPEYRNGKLVISAKSLSYVLSLFQESESNSETKDSNKDVPPDNEYEKRMRADVVPAKEIGVRFEDIGALDDIKEILQDEVLLPLRRPDLFNGGLLKPYKGILLFGPPGTGKTMLAKAIANEAGASFINVSISTITSKWFGEDEKNVRALFSLAAKVAPTIIFIDEVDSMLGQRTKSGEHEAMRKIKNEFMVHWDGLLSKPGKRILVLAATNRPYDLDEAIIRRFERRIMVGIPSAENREMILKTLLAKEKYENIDFKELSIMTKGYTGSDLKNLCTAAAYRPVRELLRQERIKENKKKEAAVQSSESASDAKEDKENRVITLRPINMDDMRQAKTQVTASYAAEGSIMSELEEWNDLFGEGGSRKKKQEQLTYFL* 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2186 772 Pfam AAA+ lid domain 650 686 IPR041569 -
Vra8g2186 772 Gene3D - 630 732 - -
Vra8g2186 772 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 457 687 IPR027417 -
Vra8g2186 772 CDD AAA 492 628 - -
Vra8g2186 772 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 433 772 - -
Vra8g2186 772 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 428 - -
Vra8g2186 772 MobiDBLite consensus disorder prediction 691 716 - -
Vra8g2186 772 Gene3D - 457 738 IPR027417 -
Vra8g2186 772 SMART AAA_5 494 631 IPR003593 -
Vra8g2186 772 Pfam ATPase family associated with various cellular activities (AAA) 498 627 IPR003959 GO:0005524|GO:0016887
Vra8g2186 772 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 433 772 - -
Vra8g2186 772 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 428 - -
Vra8g2186 772 ProSitePatterns AAA-protein family signature. 601 620 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2186 Vra-Chr8 40255211 40262738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2186 458 700 Calmodulin-binding Proteins AT3G56690 40.486 4.02e-45 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2186 - - gmx:121172906 1204.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1708 1 31724838 31732394 Vra8g2186 8 40255211 40262738 PCT