Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2179 ATGGCCATTGCTGCTTACTCTTCCTCTTCCTTTTCATGTTACTGCCTAATTCTTGCTTTCGGCCTCTCTTCTTTTACTACCTGCATTTCGGCCCACGTTGCCTTGGGCTCCAGGTTATTGTCTAGCAAGGCCCAAACTTGGGTTTCAGAAAACGGCACATTTGCTTTCGGGTTCACTCCGGCAGATACCGATAATCGATTGTTTCTGCTTGGCGTTTGGTTTGCACAGCTTCCAGGAGATCCAACTGTAGTTTGGTCACCCAATAGAGACAGTCCTGTATCCCAAGATGCAACATTGGAGCTTGACACCACTGGCAACCTTGTTCTCGTGGATGGAGACATCACAGTGTGGACCTCAAACACCTCAGGTGCCGGTGTACAAGCAGCAGTCATGGCAGAATCCGGCAACTTCATCCTCCAGAACGCCACCAGCCACCCTGTGTGGCAGAGTTTTTCTCAACCTTCCGACACTCTCCTCCCCAACCAGCTTCTAACAGTGTCTTCAGAACTAACTTCATCTAAGTCTTCTTCTCATGGTGGCTACTATTCTCTCAAAATGCTTCAACAGCGTACTTCCTTAAGCCTTGCTCTCACTTACAATCTCCTTGAGACTTACCAAGCCTCAGATGAATCATACACCAACTATTCCTATTGGAATGGCCCTGATATCTCCAATGTGACTGGGGAGGTTATAGCAGTTTTAGACCATGCTGGGAGCTTTGGGATTGTGTATGGAGACTCTTCTGACGGTGCAGTGTATGTGTACAAGAATGATGGTGACGATGCAGGCTTGCCTTCTGCAGTTAATCAATCTGCACCATCGACTGTTCTCAGGAGACTAACACTGGAAAAGAATGGCAATCTGCGGTTGTATCGATGGGACGAAGTGAATGGCTCAAGGCAGTGGATGCCACAGTGGGCAGCAGTTTCAAATCCATGTGATATTGCTGGAGTTTGTGGAAATGGGGTTTGCAATTTGGATAGAAGTAAGACAAAAGCCACTTGCACTTGCTTGCCAGGAACTTCTAAAGTTGGGAGGGATGGCTTGTGCTATGAGAATTCATCTCTTGTGGGAAAATGCAATGGCAAGCATGAAAACCTGACATCCCAGTTTAGGATTTCGACGGTGCAGCAAACCAACTATTATTTTTCTGACATTTCTGTTATAGCTAACTACAGTGATATTTCTAATGTGTCAGCATGTGGGGATGCTTGCTTGTCAGAATGTGATTGCGTGGCTTCTGTTTATGGGCTAAATGAGGAGAGAGCATATTGTTGGGTGTTGAGGAGCTTAAGTTATGGTGGTTTTGAAGATACAGGCTCAACTTTGTTTGTGAAAGTAAGAGCAAATGGGTCATGGACTCCAGAAGGCCAAGGAGGGTCTTCTGGTGGAATGGGAAGTGCAAAGGAGAAGGCTGTGATTATTCCCACTGTTGTGAGCATGGTAGTTCTCATTGCTTTGCTGAGTTTATTACTGTATTACAGCGTTCACAGGAAAAGAACTTTGAAAAGGGAGATGGAAAGTTCCTTGATCTTATCAGGTGCTCCAATGAATTTCACATACCGTGATTTGCAGATCAGAACATGCAACTTTTCACAGCTGCTAGGAACAGGTGGGTTTGGGAGTGTATATAAAGGAAGCCTGGGAGACGGTACTCTAGTGGCAGTGAAGAAACTTGACAGGGTTTTGCCTCATGGAGAGAAGGAATTCATCACTGAAGTAAACACTATTGGCTCAATGCATCATATGAATTTGGTTCGCCTATGCGGCTATTGTTCTGAGGGGTCACATAGGCTTCTGGTTTATGAGTTCATGAAGAATGGGTCATTGGATAAGTGGATCTTCCCTTCGTATCAAGGGCGAGATAGATTGTTGGATTGGACAACTCGTTTCAATATAGCCATAGCTACTGCACAAGGGATTGCATACTTTCACGAGCAATGCAGGGATCGGATAATACACTGTGACATAAAACCGGAGAATATATTGGTGGACGACAACTTTTGTCCTAAAGTATCTGATTTTGGACTGGCGAAATTGATGGGAAGGGAGCATTCTCATGTGGTGACAATGGTGAGAGGCACAAGAGGTTATTTGGCACCAGAATGGGTTAGTAATCGCCCTATAACTGTCAAAGCTGATGTTTACAGCTATGGGATGCTTCTTTTAGAGATCATTGGTGGTAGGAGAAATCTTGACATGTCCTTTGGTCCTGAGGATTTCTTCTATCCTGGTTGGGCTTACAAGGAGATGACAAATGGGTCAACAATTAAAGTGGCAGATAGAAGATTAAATGGGGCAGTTGATGAAGAAGAGCTAACGAGAGCTCTGAAAGTTGCATTTTGGTGCATCCAAGATGAGGTATCCATGCGACCAACAATGGGGGAAGTGGTGAGACTTCTGGAAGATACGGTGGACATTAATATGCCACCGATGCCACAGACAGTGCTAGAGTTAATTGAGGAAGGCTTAGACCATGTATACAAAGCTATGAAAAGAGAGAATAATCACTCCAGTTCATTCACTCTTACCAGCCATCTCACATCTCGTGCCACATGTAGCAATTCCACAATGTCACCGAGATAG 2586 0.449 MAIAAYSSSSFSCYCLILAFGLSSFTTCISAHVALGSRLLSSKAQTWVSENGTFAFGFTPADTDNRLFLLGVWFAQLPGDPTVVWSPNRDSPVSQDATLELDTTGNLVLVDGDITVWTSNTSGAGVQAAVMAESGNFILQNATSHPVWQSFSQPSDTLLPNQLLTVSSELTSSKSSSHGGYYSLKMLQQRTSLSLALTYNLLETYQASDESYTNYSYWNGPDISNVTGEVIAVLDHAGSFGIVYGDSSDGAVYVYKNDGDDAGLPSAVNQSAPSTVLRRLTLEKNGNLRLYRWDEVNGSRQWMPQWAAVSNPCDIAGVCGNGVCNLDRSKTKATCTCLPGTSKVGRDGLCYENSSLVGKCNGKHENLTSQFRISTVQQTNYYFSDISVIANYSDISNVSACGDACLSECDCVASVYGLNEERAYCWVLRSLSYGGFEDTGSTLFVKVRANGSWTPEGQGGSSGGMGSAKEKAVIIPTVVSMVVLIALLSLLLYYSVHRKRTLKREMESSLILSGAPMNFTYRDLQIRTCNFSQLLGTGGFGSVYKGSLGDGTLVAVKKLDRVLPHGEKEFITEVNTIGSMHHMNLVRLCGYCSEGSHRLLVYEFMKNGSLDKWIFPSYQGRDRLLDWTTRFNIAIATAQGIAYFHEQCRDRIIHCDIKPENILVDDNFCPKVSDFGLAKLMGREHSHVVTMVRGTRGYLAPEWVSNRPITVKADVYSYGMLLLEIIGGRRNLDMSFGPEDFFYPGWAYKEMTNGSTIKVADRRLNGAVDEEELTRALKVAFWCIQDEVSMRPTMGEVVRLLEDTVDINMPPMPQTVLELIEEGLDHVYKAMKRENNHSSSFTLTSHLTSRATCSNSTMSPR* 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2179 861 PIRSF SRK 3 856 IPR024171 GO:0004674
Vra8g2179 861 Gene3D Phosphorylase Kinase; domain 1 493 604 - -
Vra8g2179 861 Pfam D-mannose binding lectin 82 169 IPR001480 -
Vra8g2179 861 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 14 861 - -
Vra8g2179 861 Pfam Protein kinase domain 532 797 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2179 861 SUPERFAMILY Protein kinase-like (PK-like) 507 801 IPR011009 -
Vra8g2179 861 CDD B_lectin 38 154 IPR001480 -
Vra8g2179 861 ProSitePatterns Protein kinases ATP-binding region signature. 535 558 IPR017441 GO:0005524
Vra8g2179 861 Gene3D - 34 153 IPR036426 -
Vra8g2179 861 Gene3D Transferase(Phosphotransferase) domain 1 605 817 - -
Vra8g2179 861 SUPERFAMILY alpha-D-mannose-specific plant lectins 83 169 IPR036426 -
Vra8g2179 861 SMART blect_4 38 154 IPR001480 -
Vra8g2179 861 ProSiteProfiles Bulb-type lectin domain profile. 31 152 IPR001480 -
Vra8g2179 861 PANTHER OS07G0415500 PROTEIN 14 861 - -
Vra8g2179 861 ProSitePatterns Serine/Threonine protein kinases active-site signature. 652 664 IPR008271 GO:0004672|GO:0006468
Vra8g2179 861 SMART serkin_6 529 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2179 861 ProSiteProfiles Protein kinase domain profile. 529 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2179 861 Pfam S-locus glycoprotein domain 273 341 IPR000858 GO:0048544
Vra8g2179 861 CDD STKc_IRAK 535 802 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2179 Vra-Chr8 40158051 40162504 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2179 500 811 Receptor kinase-like Gene Family AT5G20050 44.785 3.28e-78 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vra8g2179 Pkinase 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2179 - - gmx:100794281 1529.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2179 8 40158051 40162504 Vra8g2179 8 40158051 40162504 ECH