Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2172 ATGACGGTGTTTTGGAGCGTGCTTTGTGGGGAATCTGGTTGTTCGGAGGCGGGAAGAATGCCTTGCAGTTATGACTTTAGACTTCTCATCGATCCTTCTACTTGTGTCAACCATTTGTTGATCTCTTGCTTTGATGTGTTATTACTCATGATCCTTGTCTTCATCATGATCAAGAAATCAACACTAAAACCATCTCGGGGTATAATACAGGTGCAAAGATATTCATATTTGCAGACAGTTTCTTCCATAGCAAATGGAGTTATTGGGTTGGTGCATTTGTGCTTAGGCATTTGGGTTTTAGAGGAAAAGTTGAGGAAGACCCAAACTGTGTTGCCTTTTGATTGGTGGTTGCTAGAAATCTTTCACGGATTAACGTGGTTGTTAGTGAGTTTAATGTTAAGTCTTAAGTTGAAACAACTTCCGAGAAGATGGTCGAGGCTTTATTCTATTCTGATCTTTTTGATTTCTGGTATTTTCTGTGCGTCATCATTGTTTTATGCAATTAGTAGCAGAGAACTGTCCCTTATGATAGCTTCAGATATTCTATCTTTTCCGGGGGCGATATTATTGTTATTATGCACATTTAAGGAATCCAGTTATGGAGAAACTAACAGAGAAACTGATGAAAGTCTTTATTCCCTCTTAAATGGCGAGTCTGATAAAAAAGAATCTATTTCATATGTAACACCATTTGCCAAAGCGGGGTTCTTCAGTAAAATGTCATTCTGGTGGTTGAATCCATTGATGAAAATGGGTAAAGAGAAAACACTTCAGGAAGAAGACATTCCCGGGTTACGGGAGGAGGATCGAGCAGAAAGTCGTTATTTACTATTTCTGGACCAACTGAACAGAGAAAAACAGAAGGATCCATCCTCGCAACCATCAGTTTTGAGGATAATACTTTTATGCCACTGGAGAGAAATTTTAGTATCGGGATTCTTTGCATTGCTTAAGGTACTTGCATTGTCTTCGGGACCTCTTCTTTTGAATTCTTTTATATTGGTTGCTGAGGGTAATGAGAGTTTCAAATATGAAGGTTTTGTATTGGCAATATCACTTTTCTTTACAAAATCCATTGAATCCCTTTCTCAAAGGCAATGGTATTTCCGCTGCAGACTTATTGGTCTGAAAGTTAGGTCACTGCTAACTGCGGCCATTTATAGAAAGCAATTGAGGTTATCCAATTCTGCTAGATTGATGCATTCTGGTGGTGAGATAATGAATTATGTCACTGTGGATGCTTATAGAATTGGTGAATTTCCCTATTGGTTTCACCAGACTTGGACAACTAGCTTTCAACTATGCATCTCATTGGTAATTCTTTTTCGTGCTGTTGGGCTGGCAACAATTGCCTCCTTGGTGGTGATAGTAATCACTGTTCTTTGCAACACTCCACTTGCAAAGTTACAACACAAGTTTCAAACCAAGCTTATGGTCGCACAAGATGAGAGATTGAAGGCTTGCTCTGAGGCTCTTGTGAATATGAAGGTGTTGAAGTTGTATGCATGGGAAACCAAGTTTAGAAATGCTATAGAGAGATTAAGGAAAGAGGAGCTCAAATGGTTGTATGCAGTGCAATTAAGAAAGGCGTACAACACCTTTCTCTTTTGGTCCAGCCCTGTTCTGATCTCTGCTGCTTCCTTTGGGGCATGTTACTTTCTTAGTGTTCCTCTGCATGCAAATAATGTTTTCACTTTTGTGGCTACTTTGCGCCTTGTTCAAGATCCAATTAGAACCATTCCTGATGTTATTGGGGTGATCATTCAGGCAAAAGTTGCGTTTACTAGGATTGTAAAATTTCTGGAGGCACCTGAACTGCAAAGTGCAAATGTCACAAAAAGGTCTCTCGATGACAATATGAGGGGTTCAATAACAATCAAGTCTGCGAACTTTTCATGCGAAGATAATGTATCAGAGCCAACACTGAGAAACATAAATTTGGAGGTTAGACCAGGGCAAAAGGTGGCTATCTGTGGAGAGGTTGGCTCAGGCAAATCAACTCTCTTAGCATCGATTCTCAGAGAAGTTTCTATGACTCAGGGAGAACTTGAAGTGTATGGCAAGTTTGCCTATGTTTCTCAAACAGCCTGGATACAATCAGGTACAGTTCGTGAGAATATATTGTTTGGGGCAGACATGGATGCTGAAAAATATCAAGTAACACTTCATAGGTCTTCACTATTGAAGGACCTAGAGTTGTTTCCCAATGGCGATCTCACTGAAATAGGAGAGAGAGGAGTTAACCTGAGTGGAGGCCAGAAGCAGCGAATTCAACTTGCACGTGCACTATATAAGAATGCTGATATATATCTCTTGGATGACCCATTCAGTGCAGTTGATGCACATACTGCAACAAATTTGTTTAATGAATACATAATGGAAGGACTTGCTGGGAAAACAGTCTTGCTCGTGACTCATCAAGTTGACTTCCTTCCAGCATTTGATTACGTTTTGTTGATGTCAGATGGTGAAATTATAGAAGCTGCTCCCTATCACCATTTGTTGAGCTCAAGCCAAGAATTTCAGAACCTTGTGAATGCCCACAAAGAGACTGCTGGTTCTGACCGGCTTGTGGATGTCACTTCTTCCCAGAAACATTCAAATAGTTCTAGAGATATTAGAAAAACATCCATGGAGAAACAATATGAAGCATCAAAAGGTGATCAATTGATTAAGCAAGAAGAGAGAGAAAAAGGAGACCATGGTTTCAGACCGTATATACAGTATCTGAGTCAGAGCAAAGGATATATATTATTCTCTTTGGCTGTTTTTTCTCAGCTAACGTTTGTGATTGGCCAAATATTACAAAACTCGTGGATGGCAGCTAGTGTTGACAACCCTCAAGTCAGCTCTTTGAAATTGATTGTGGTTTACTTGTTGATTGGAGCTATTTCATCAACATTCTTGTTGGCCAGAAGTCTTGCTACAGTCGCTTTTGGCCTTCAATCGTCAAAGTCATTATTTTTACAGCTACTGAACTCCCTTTTTCGTGCTCCCATGTCATTTTATGACTCCACTCCTTTAGGACGGATACTAACTAGGGTCTCCTCGGATCTCAACATTGTGGACCTTGATGTTGCATTCAGCTGTTTGTTTACTGTGGCAGCCACTTCAAATTGTTATGCTAATCTTGCAGTTTTAGCAGTTGTTACTTGGCAAGTTTTGTTTGTCTCAATCCCAATGATTTATTTTGCAATCCGCTTGCAGAAATATTACTTTGCTTCTGCGAAAGAACTGATGCGGTTGAATGGCACCACAAAATCCTTTGTAGCCAACCATCTTGCTGAATCTGTTGCTGGAGCTGTGACAATAAGGGCTTTTGAGGAGGAAGATCGTTTTTTTCAGAAAAATCTTGATCTAATTGATGTCAATGCTAGTCCTTACTTCCATAGTTTTGCAGCAAATGAGTGGTTGATTCAACGATTAGAAACAGTCAGTGCTGTTGTTCTCGCATCTGCTGCACTTTGCATGGTCGTACTTCCACCTGGAAGTTTCTCCTCTGGATTTATTGGCATGGCCCTTTCTTATGGCCTTTCACTTAACCTCTCCTTGGTATTTTCAATTCAAAATCAATGCAATCTCGCGAACTATATAATATCAGTGGAGAGGCTAAATCAGTATATGCATATACCAAGTGAGGCACCAGAAGTTATAGAAGGAAATCGTCCTCCTGCGAATTGGCCAGTTGCTGGTCGAGTACAGATAAAGGAATTGCAGATACGTTACAGGCCTGATGCACCACTAGTACTGCGTGGCATCACATGCACGTTTGAAGGAGGGCACAAAATTGGTATTGTTGGCAGAACAGGCAGTGGAAAATCCACTCTCATAGGTGCTCTATTCCGTCTTGTAGAGCCAGCTGGTGGACAAATAGTAGTTGATGGCATAGACATTTGTTCTATTGGTCTTCATGACTTGAGGTCACGCTTTGCTATCATACCTCAAGATCCTACTCTTTTTAATGGCACAGTCAGATACAACTTGGACCCCTTATCTCAACACTCTGATCAAGAGATATGGGAGGTTCTTGGGAAGTGTCAGTTACAAGAGGCTGTCCAAGAGAAAGAAGAGGGATTAGGATTAAACTCTTCAGTTGTTGAAGCTGGAGCAAACTGGAGCATGGGACAGCGACAACTATTTTGTTTAGGACGTGCTCTTCTACGAAGAAGTCGCATATTGGTGCTTGATGAAGCAACTGCATCAATTGATAATGCAACTGATTTGATTTTGCAGAAAACCATTCGAACCGAGTTTGCAGATTGTACAGTTATCACGGTAGCTCACCGGATACCAACTGTGATGGATTGCACCAAGGTTCTTGCCATTAGTGATGGAAAACTTGTGGAGTATGATGAACCAATGAAGTTGATAAAGAGAGAAGGATCGCTGTTTGGGAATCTTGTCAATGAATATTGGTCACATTTTCGGTCTGCAGAATCTCAATGA 4446 0.406 MTVFWSVLCGESGCSEAGRMPCSYDFRLLIDPSTCVNHLLISCFDVLLLMILVFIMIKKSTLKPSRGIIQVQRYSYLQTVSSIANGVIGLVHLCLGIWVLEEKLRKTQTVLPFDWWLLEIFHGLTWLLVSLMLSLKLKQLPRRWSRLYSILIFLISGIFCASSLFYAISSRELSLMIASDILSFPGAILLLLCTFKESSYGETNRETDESLYSLLNGESDKKESISYVTPFAKAGFFSKMSFWWLNPLMKMGKEKTLQEEDIPGLREEDRAESRYLLFLDQLNREKQKDPSSQPSVLRIILLCHWREILVSGFFALLKVLALSSGPLLLNSFILVAEGNESFKYEGFVLAISLFFTKSIESLSQRQWYFRCRLIGLKVRSLLTAAIYRKQLRLSNSARLMHSGGEIMNYVTVDAYRIGEFPYWFHQTWTTSFQLCISLVILFRAVGLATIASLVVIVITVLCNTPLAKLQHKFQTKLMVAQDERLKACSEALVNMKVLKLYAWETKFRNAIERLRKEELKWLYAVQLRKAYNTFLFWSSPVLISAASFGACYFLSVPLHANNVFTFVATLRLVQDPIRTIPDVIGVIIQAKVAFTRIVKFLEAPELQSANVTKRSLDDNMRGSITIKSANFSCEDNVSEPTLRNINLEVRPGQKVAICGEVGSGKSTLLASILREVSMTQGELEVYGKFAYVSQTAWIQSGTVRENILFGADMDAEKYQVTLHRSSLLKDLELFPNGDLTEIGERGVNLSGGQKQRIQLARALYKNADIYLLDDPFSAVDAHTATNLFNEYIMEGLAGKTVLLVTHQVDFLPAFDYVLLMSDGEIIEAAPYHHLLSSSQEFQNLVNAHKETAGSDRLVDVTSSQKHSNSSRDIRKTSMEKQYEASKGDQLIKQEEREKGDHGFRPYIQYLSQSKGYILFSLAVFSQLTFVIGQILQNSWMAASVDNPQVSSLKLIVVYLLIGAISSTFLLARSLATVAFGLQSSKSLFLQLLNSLFRAPMSFYDSTPLGRILTRVSSDLNIVDLDVAFSCLFTVAATSNCYANLAVLAVVTWQVLFVSIPMIYFAIRLQKYYFASAKELMRLNGTTKSFVANHLAESVAGAVTIRAFEEEDRFFQKNLDLIDVNASPYFHSFAANEWLIQRLETVSAVVLASAALCMVVLPPGSFSSGFIGMALSYGLSLNLSLVFSIQNQCNLANYIISVERLNQYMHIPSEAPEVIEGNRPPANWPVAGRVQIKELQIRYRPDAPLVLRGITCTFEGGHKIGIVGRTGSGKSTLIGALFRLVEPAGGQIVVDGIDICSIGLHDLRSRFAIIPQDPTLFNGTVRYNLDPLSQHSDQEIWEVLGKCQLQEAVQEKEEGLGLNSSVVEAGANWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTKVLAISDGKLVEYDEPMKLIKREGSLFGNLVNEYWSHFRSAESQ* 1482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2172 1481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 619 847 IPR027417 -
Vra8g2172 1481 Gene3D ABC transporter type 1, transmembrane domain 280 606 IPR036640 GO:0005524|GO:0016021
Vra8g2172 1481 Gene3D ABC transporter type 1, transmembrane domain 881 1214 IPR036640 GO:0005524|GO:0016021
Vra8g2172 1481 SMART AAA_5 1259 1453 IPR003593 -
Vra8g2172 1481 SMART AAA_5 651 824 IPR003593 -
Vra8g2172 1481 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 73 1480 - -
Vra8g2172 1481 CDD ABC_6TM_ABCC_D2 915 1208 IPR044726 GO:0140359
Vra8g2172 1481 Gene3D - 1217 1469 IPR027417 -
Vra8g2172 1481 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 309 589 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra8g2172 1481 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 917 1196 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra8g2172 1481 CDD ABCC_MRP_domain1 624 824 - -
Vra8g2172 1481 Gene3D - 619 853 IPR027417 -
Vra8g2172 1481 SUPERFAMILY ABC transporter transmembrane region 904 1213 IPR036640 GO:0005524|GO:0016021
Vra8g2172 1481 SUPERFAMILY ABC transporter transmembrane region 297 602 IPR036640 GO:0005524|GO:0016021
Vra8g2172 1481 ProSitePatterns ABC transporters family signature. 749 763 IPR017871 GO:0005524
Vra8g2172 1481 MobiDBLite consensus disorder prediction 859 888 - -
Vra8g2172 1481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1223 1462 IPR027417 -
Vra8g2172 1481 Pfam ABC transporter transmembrane region 309 573 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra8g2172 1481 Pfam ABC transporter transmembrane region 917 1157 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra8g2172 1481 Pfam ABC transporter 1250 1400 IPR003439 GO:0005524
Vra8g2172 1481 Pfam ABC transporter 642 776 IPR003439 GO:0005524
Vra8g2172 1481 CDD ABC_6TM_ABCC_D1 310 597 IPR044746 GO:0140359
Vra8g2172 1481 MobiDBLite consensus disorder prediction 868 888 - -
Vra8g2172 1481 CDD ABCC_MRP_domain2 1231 1453 - -
Vra8g2172 1481 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1235 1469 IPR003439 GO:0005524
Vra8g2172 1481 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 626 847 IPR003439 GO:0005524
Vra8g2172 1481 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 73 1480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2172 Vra-Chr8 40091636 40099376 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2172 618 872 Calmodulin-binding Proteins AT2G36910 29.455 2.87e-25 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2172 K05666 - gmx:100811468 2561.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1674 1 30585201 30592256 Vra8g2172 8 40091636 40099376 PCT