Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2171 ATGGAGAAGTTTTGCAGTATGTTTTGTGGGGAAGCTGGTTGTTCAGTGCCAGGAGGGAATCCTTGCATTTATGATTTTGAGTTTCTGAAAGATCCATCCTCGTGTATCAACCATTTGCTATTCATTTGCATTGATGTGTTGCTGCTGGTCATGATCTCATTTGCAATCCTCAAGAAGTCATCAGAGAAACCATCTCAGGGTGTAATCAGAGTGCAAAATTATTCCAAATTGCAGCTAGTGTCTGCCATAGCCAATGGCTCTCTGGGGCTGATACATCTGTGCTCAGGCATTTGGCTTTTAGAGGAGAATCTGAGGAAGGCACAAACTGTTTTTCCTCTTGATTGGTGGATGCTAGAATTCATTCAGGGATTCACTTGGTTGCTGCTGGGTTTTACAATAAGTCTTCAGCTGAAAAAACTTCCTAGAGCATGGTTATTTATGTTTTCTATCGTAATCTTCTTGGTTTCTGGTATTCTCTGTGTTTTATCCTTGATTTATTCAATTGATAACAGAAAACTATCCCTGAAAATAGTTCTAGATGTTTTATCTTTTCCAGGGATAATTCTGTTGCTATTATGCATTTACAAGGAATCTAAGTACAGAGACACCGATAGAGAAAATAATGGAAGTCTGTATACCCCTTTAAAAGAAGAGACCAATAAAGTTGACTCTGATAGTTATGTTACACTATTTTCAAAAGCTGGATTCTTCAGCAGGATGTCATTTTGGTGGATGAATCCGTTGATGAAAAGGGGTAAGAAGAAAACACTTCAGGAAGAGGATATTCCAAAGTTGAGCGAAGCAGATCAAGCAGGAAGTTGTTATTTTCTGTTTCTAGACCAATTGAACAGACAGAAACAGAAAGAACCATCATCGCAGCCATCAGTTTTGACGACAATATTTATGTGCTACTGGAAGGAGATTTTGATATCAGGATTATTTGCTTTGTTAAAGGTGATCACTCTCTCTTCTGGCCCTTTGCTTCTGAATTCCTTTATATTGGTTGCTGAGGGTCATGGGAGTTTCAAATATGAAGGCTATGTCTTGGCCATATCACTAGTCTTCACAAAGATCATAGAATCCTTATCACAAAGGCAGTGGTACTTCCGCACCAGACTCATTGGTATTAAAGTTAGATCATTGCTCATTGCCGCAATTTATAAAAAGCAACTAAGGTTGTCTAATGCTGCAAGATTGACGCACTCTGGTGGTGAGATAATGAACTATGTGAATGTGGACGCCAATAGAATTGGAGAGTTTCCCTATTGGTTTCACCAAACGTGGACAACAAGCGTTCAGCTATGTATTGCATTGGTGGTGCTTTTCCGTGCTGTTGGACTGGCAACATTTGCCTCATTGGCGGTGATAGCTCTAACTGTGCTCTGCAATACTCCACTTGCTAAGTTGCAGCATAAGTTTCAGCGAAAACTTATGATGGCACAAGATGAGAGATTGAAGGCCACTTCCGAGGCTCTTGTGAGCATGAAGGTGTTGAAGCTATATGCGTGGGAAACCAATTTCAGAAATGCAATTGAAAAGTTGAGGGATGTGGAACTGGAAAGGTTGTCTGTGGTGCAACTGAGAAGGTCATATAGCAACTTTCTCTTTTGGGCCTCACCTGTTTTAGTCTCTGCTGCTTCCTTTGGGGCATGTTACTTGCTTAATGTTCCTTTGCATGCAAATAATGTTTTCACTTTTGTAGCAACTTTACGCCTTGTTCAAGATCCTATTAGAACAATTCCTGATGTAATTGGAGTGGTCATTCAAGCAAAAGTTGCATTTGCAAGGATTGTAAAATTTCTTGAGGCGCCTGAACTGCAAAGTGAAAATGCTAGGAGAGGTTTTAGTGACAATAAGAGGGGCTCAATTTTGATCAATTCCGCTAACTTTTCATGGGAAGATAACTTGTCAAAACCAACACTGAGAAACATAAATTTGGAGGTTAGACCAGGGAAAAAAGTAGCAATCTGTGGAGAAGTTGGCTCAGGAAAATCAACCCTTTTAGCAGCAATTCTCAGAGAAGTTCCTATTACTCGTGGAACTATTGAAGTTCATGGAAAATTTGCCTATGTTTCTCAAACAGCATGGATACAGACAGGTACAATACGTGAGAATATATTGTTTGGAGCAGCCATGGATGCTGAAAAATATCAAGAAACAATCCATAGGTCTTCACTGATGAAGGACCTTGAGTTGTTTCCACACGGTGATCTCACTGAAATAGGGGAGAGAGGGGTCAACCTGAGTGGAGGTCAGAAGCAGCGAATTCAACTTGCTCGCGCTCTTTATCAGAATGCTGATATTTATCTCTTGGATGATCCATGCAGTGCTGTTGATGCACACACTGCTACAAACTTGTTCAATGATTACATCATGGAAGGACTTGCAGGGAAGACAGTCTTGCTTGTGACTCATCAAGTTGATTTTCTTCCAGCCTTTGATTCTGTTTTGTTGATGTCGAATGGGGAAATCATAGAAGCTGCTCCTTATCATCATCTGTTGAGTTCAAGCCAAGAATTTCAAGACCTTGTTAATGCTCACAAGGAGACCGCTGGTTCTGAGAAACTAGTGGATGTCAGTTCTTCTAGTAGAAATTCAAATACTGTTACAGAGATTAGTAAAATAGAAATGGAGAAGCAGTGTGAAACATCAGAAGGCAGTAAATTAATAAAGAAAGAGGAGAGGGAGAAAGGAAACAGAGGGTTCAAACCTCACTTGCAGTATCTAACTCAGAACAAAGGATATATATACTTCTCTGTGGCTTCTATTTCTCACCTTATTTTCACAATTGGCCAGATATTTCAGAACTTATGGATGGCTTCCAGTGTTGACAACCCTTATGTCAGCACATTAAAATTGATTGCAGTGTACTTGTTGATTGGGTTTATTTCTGCATGTTTCTTGTTCATCAGAAGTCTTGTTGTGGTTGCTATGAGTATTCGAACATCAAAATCTTTACTTTTACAGCTACTGGACTCCCTTTTTCGTGCACCTATCTCATTTTATGACTCCACACCTTTGGGAAGGATTCTTAGTAGGGTCTCCTCAGATCTAAGCACTGTTGATCTCGATGTCCCATTTGGCCTTATTTTTGCTGTGGGAGCTACTGCAACTTGTTATTCAAATCTTGCAGTTATAGCAGCCATTACTTGGCAAGTCCTGTTTATCTCTGTACCAATGCTTTACATAGCATTTCGCTTGCAGAGATATTACTATGCCACTGCAAAAGAATTGATGAGGATGAATGGCACGACAAAATCTTATGTGGCTAATCATCTTGCCGAATCTATTGCTGGAGTTGTGACAATAAGGGCTTTTGAAGAGGAGGGTCGTTTTTTTGCTAAGAATCTTGATCTGATTGATGTCAATGCCAGTCCTTACTTTCATACCTATGCAGCAAACGAATGGTTGATGCTAAGGTTAGAAACAATAAGTGCAGTGGTTTTTGCATCTGCTGCACTCTGCATGGTGGTACTTCCACCTGGGACTTTCAACTCTGGGTTTATTGGCATGGCTCTCTCATACGGCCTTTCATTAAACTCTTCCCTAGTGTTTTCAATTCAAAACCAATGCACTCTAGCAAATCAAATCATATCAGTGGAGAGGCTAAATCAATACATGCATATACCAAGTGAGGCCCCAGAAGTGATAGAAGGAAATCGTCCACCTACTAATTGGCCAGCTGAGGGAAAAGTAGAAATTCATGATTTGAAGATAAGGTACCAGCCTGATTCACCACTAGTATTGCGTGGGATCACATGCACGTTTGAAGGAGGGCACAAGATTGGTGTTGTTGGCAGAACAGGAAGTGGAAAGTCCACTCTTATAGGGGCCCTATTCCGTCTGGTAGAACCTGCTGGTGGGAAAATAGTAGTTGATGGCATAGACATTTGTTCTATTGGACTTCATGATTTGAGGTCACGCTTTGGTATTATACCTCAGGATCCTACTCTTTTCAATGGAACAGTCAGATACAATTTGGACCCCTTATCTCACCACTCTGATCAAGAGATATGGGAGGTTCTTGGGAAATGCCAGCTGAGAGAAGTTGTTGAAGAGAAAGAAGAGGGGTTGGATTCTTCAGTTGTGGAGGCTGGGGCAAATTGGAGCATGGGGCAACGACAGTTATTCTGCTTGGGGCGTGCCCTTTTGAGGAGAAGTCGGATACTGGTGCTTGATGAAGCAACTGCATCAATTGATAATGCAACTGATTTGATTCTACAGAAAACAATCAAGGCAGAGTTTGCAGATTGTACTGTAATCACTGTAGCGCACAGAATACCAACCGTGATGGACTGCACTAAGGTTGTGGCCATCCATGAAGGAGAATTGGTGGAATATGACGAGCCAATGAAGTTGATGAAGAGAGAAGAATCACTGTTTGGACAGCTTGTGAAGGAATACTGGTCTCATTTGCAGGCAGCAGAATCACACTAA 4437 0.4095 MEKFCSMFCGEAGCSVPGGNPCIYDFEFLKDPSSCINHLLFICIDVLLLVMISFAILKKSSEKPSQGVIRVQNYSKLQLVSAIANGSLGLIHLCSGIWLLEENLRKAQTVFPLDWWMLEFIQGFTWLLLGFTISLQLKKLPRAWLFMFSIVIFLVSGILCVLSLIYSIDNRKLSLKIVLDVLSFPGIILLLLCIYKESKYRDTDRENNGSLYTPLKEETNKVDSDSYVTLFSKAGFFSRMSFWWMNPLMKRGKKKTLQEEDIPKLSEADQAGSCYFLFLDQLNRQKQKEPSSQPSVLTTIFMCYWKEILISGLFALLKVITLSSGPLLLNSFILVAEGHGSFKYEGYVLAISLVFTKIIESLSQRQWYFRTRLIGIKVRSLLIAAIYKKQLRLSNAARLTHSGGEIMNYVNVDANRIGEFPYWFHQTWTTSVQLCIALVVLFRAVGLATFASLAVIALTVLCNTPLAKLQHKFQRKLMMAQDERLKATSEALVSMKVLKLYAWETNFRNAIEKLRDVELERLSVVQLRRSYSNFLFWASPVLVSAASFGACYLLNVPLHANNVFTFVATLRLVQDPIRTIPDVIGVVIQAKVAFARIVKFLEAPELQSENARRGFSDNKRGSILINSANFSWEDNLSKPTLRNINLEVRPGKKVAICGEVGSGKSTLLAAILREVPITRGTIEVHGKFAYVSQTAWIQTGTIRENILFGAAMDAEKYQETIHRSSLMKDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPCSAVDAHTATNLFNDYIMEGLAGKTVLLVTHQVDFLPAFDSVLLMSNGEIIEAAPYHHLLSSSQEFQDLVNAHKETAGSEKLVDVSSSSRNSNTVTEISKIEMEKQCETSEGSKLIKKEEREKGNRGFKPHLQYLTQNKGYIYFSVASISHLIFTIGQIFQNLWMASSVDNPYVSTLKLIAVYLLIGFISACFLFIRSLVVVAMSIRTSKSLLLQLLDSLFRAPISFYDSTPLGRILSRVSSDLSTVDLDVPFGLIFAVGATATCYSNLAVIAAITWQVLFISVPMLYIAFRLQRYYYATAKELMRMNGTTKSYVANHLAESIAGVVTIRAFEEEGRFFAKNLDLIDVNASPYFHTYAANEWLMLRLETISAVVFASAALCMVVLPPGTFNSGFIGMALSYGLSLNSSLVFSIQNQCTLANQIISVERLNQYMHIPSEAPEVIEGNRPPTNWPAEGKVEIHDLKIRYQPDSPLVLRGITCTFEGGHKIGVVGRTGSGKSTLIGALFRLVEPAGGKIVVDGIDICSIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSHHSDQEIWEVLGKCQLREVVEEKEEGLDSSVVEAGANWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIKAEFADCTVITVAHRIPTVMDCTKVVAIHEGELVEYDEPMKLMKREESLFGQLVKEYWSHLQAAESH* 1479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2171 1478 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1232 1466 IPR003439 GO:0005524
Vra8g2171 1478 ProSitePatterns ABC transporters family signature. 748 762 IPR017871 GO:0005524
Vra8g2171 1478 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 625 846 IPR003439 GO:0005524
Vra8g2171 1478 CDD ABCC_MRP_domain1 623 823 - -
Vra8g2171 1478 Pfam ABC transporter transmembrane region 919 1156 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra8g2171 1478 Pfam ABC transporter transmembrane region 309 574 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra8g2171 1478 SMART AAA_5 650 823 IPR003593 -
Vra8g2171 1478 SMART AAA_5 1258 1442 IPR003593 -
Vra8g2171 1478 Gene3D - 617 852 IPR027417 -
Vra8g2171 1478 CDD ABCC_MRP_domain2 1230 1450 - -
Vra8g2171 1478 SUPERFAMILY ABC transporter transmembrane region 913 1212 IPR036640 GO:0005524|GO:0016021
Vra8g2171 1478 Gene3D ABC transporter type 1, transmembrane domain 880 1213 IPR036640 GO:0005524|GO:0016021
Vra8g2171 1478 Gene3D ABC transporter type 1, transmembrane domain 280 606 IPR036640 GO:0005524|GO:0016021
Vra8g2171 1478 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 70 1478 - -
Vra8g2171 1478 SUPERFAMILY ABC transporter transmembrane region 297 602 IPR036640 GO:0005524|GO:0016021
Vra8g2171 1478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1222 1461 IPR027417 -
Vra8g2171 1478 CDD ABC_6TM_ABCC_D1 310 597 IPR044746 GO:0140359
Vra8g2171 1478 Pfam ABC transporter 1249 1397 IPR003439 GO:0005524
Vra8g2171 1478 Pfam ABC transporter 641 775 IPR003439 GO:0005524
Vra8g2171 1478 Gene3D - 1216 1467 IPR027417 -
Vra8g2171 1478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 619 846 IPR027417 -
Vra8g2171 1478 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 309 589 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra8g2171 1478 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 926 1195 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra8g2171 1478 CDD ABC_6TM_ABCC_D2 914 1207 IPR044726 GO:0140359
Vra8g2171 1478 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 70 1478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2171 Vra-Chr8 40079431 40086288 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2171 617 866 Calmodulin-binding Proteins AT2G36910 31.022 7.16e-24 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2171 K05666 - gmx:100784336 2655.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2171 8 40079431 40086288 Vra8g2171 8 40079431 40086288 ECH
Vra1g1669 1 30353620 30359948 Vra8g2171 8 40079431 40086288 PCT