Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2168 ATGCTTTGTTCCTCTCTACCACCACTTTTCTTCTTCCTCCTCATCCCCTCTGTACTTTCATTCCCTCTCTTCTCCTCCGACAACCTCACCCTCTACGGTGACGCGTTCTTCTCTCACAAAGCCATCACTCTCACCACCCACCAACCCACCTGCTCCTCCTCCTCCATCGGCAGAGCCTTCTTCATCTACCCCCTCCGTTTTCTTGATCCCCAAACCAACTCCACTGCCTCCTTCTTCTCCCGCTTCTCCTTCTCCATCCTCTCCTCTCCCTCCTGCCCCTCCGGCGAAGGCCTCGCCTTCCTCATCGCCTCCTCCACCCACTTCCCTGCCCTCTCCATGGGCCTCCCCCAACCCTCCCCCAACTCAACCTCCTTCTTAGCCGTCGAGTTCGACACTAACTTCGACCCCTCCCTCGGCGACATCAACGACAACCACGTGGCCCTTGACGTCAACAGTGCCTCCTCCTTTGCATCCGTCGACGCCTTCTCCCGCGGCATTGACCTCAAGAGTGGCAAACTCATCACTGCATGGGTGGAGTACCGTCATGCAATCAAGATGTTAAGTGTATGGCTCGCTTATTCCTCCACCAGACCTTCCACTCCCATTCTTGTTTCTCAAATAGACCTCTCCGAGAGACTTGAAGACTTCATGCACGTTGGTTTCACGGCCTCCAATGGGAAGGGGTCAAGTGATTACCTTGTTCATCATTGGCAGTTCACGACTTTCGGCCATGACTCTCGCTCCATGGACGTGATCGATGAAGGTGACTGTTTCTTGTGTTATGAAGGGGATTCTACGGATTTCGGTCATGGTTCGAACATGAGGGTGAATGAGAGGAAGAAAAAGATTAAGGAGATGGCTCTTGGGTTGGGAGGGTTGACGGCGTTTGTGGTGTCGGTTTTGGCGGCGATGATTGTGGTGTGTGTTTTCTTGACAAGGAAGAAAGGAGTTGTTAGGAAGAATATGGAGCAAAGGCAAAGTTGTGGGACTCAGACGAGTAAAGTTCCGACTAGGTTGTCACTCTCGGAGATTAAGTCTGCGACAATGGGGTTTAATCGTGACAGGCTTGTTGGGGAGGGTGCCTCTGCCAAGGTTTATAAAGGGTATCTTCCCTTCGGAGGGGATGTGGCAGTGAAGAGATTTCAGAGGCAAAAAGATTTGAATTGTTTACATAACCCTTTTGCCACCGAGTTTGCCACCATGGTGGGTTACTTGCGGCACAAGAATTTGGTTCAGCTTAAGGGGTGGTGCTGTGAGGGAAAAGAGTTGGTCCTGGTTTACGAGTTTCTTCCCAATGGAAGCCTGAATAAGGTTCTGCACAGGAACTTCAATTCTTCCATGGTTCTATCGTGGAGGCAAAGGGAGAATATCGTTCTTGGGGTTGCTGCTGCTCTGATCTATCTTCACGAAGAGTGTGAGAGGCAGATCATTCACAGGGATGTGAAGAGCTGCAACATAATGCTTGATGCAGATTTCAATGCGAAGCTTGGGGATTTTGGGCTTGCGGAAGTGTATGAGCACAGTTGTAGCAGGAGGGAAGCTACTATACCGGCAGGGACAATGGGATATCTTGCTCCAGAGTATGTTTATTCTGGTGTTCCTACTGTGAAGAGTGATGTGTACAGCTTTGGGGTGGTGGTGTTGGAAGTGGGAAGTGGGAGGAAGCCTGTGGAAGATGATGGCAGTGTGGTTGTGGACTATGTGTGGAGCTTGTGGGAAAAGGGGAAACTGATTGAGGGTGCTGATCCAAGATTGATGGGGAAATATGATGCAGTAGACATGGAAAGGATGCTATTGGTGGGGCTTCTATGTGTGCATCCTGATCAATCGAAGAGGCCAACAGTAAGAGAAGCAGCAAGAATGCTTAATAAGGAAGCAGCACTTCCTCTTTTACCTCCTGTTAAACCAAGGCTCAGAATTAGGCCTATTTCTCCTCAAACACACCATGTTCTTGGAGATTGCCTCAACACAGATGAGCCTCCTTATTTCACCCCCAGAAGCCACTTTTACTAG 2013 0.5007 MLCSSLPPLFFFLLIPSVLSFPLFSSDNLTLYGDAFFSHKAITLTTHQPTCSSSSIGRAFFIYPLRFLDPQTNSTASFFSRFSFSILSSPSCPSGEGLAFLIASSTHFPALSMGLPQPSPNSTSFLAVEFDTNFDPSLGDINDNHVALDVNSASSFASVDAFSRGIDLKSGKLITAWVEYRHAIKMLSVWLAYSSTRPSTPILVSQIDLSERLEDFMHVGFTASNGKGSSDYLVHHWQFTTFGHDSRSMDVIDEGDCFLCYEGDSTDFGHGSNMRVNERKKKIKEMALGLGGLTAFVVSVLAAMIVVCVFLTRKKGVVRKNMEQRQSCGTQTSKVPTRLSLSEIKSATMGFNRDRLVGEGASAKVYKGYLPFGGDVAVKRFQRQKDLNCLHNPFATEFATMVGYLRHKNLVQLKGWCCEGKELVLVYEFLPNGSLNKVLHRNFNSSMVLSWRQRENIVLGVAAALIYLHEECERQIIHRDVKSCNIMLDADFNAKLGDFGLAEVYEHSCSRREATIPAGTMGYLAPEYVYSGVPTVKSDVYSFGVVVLEVGSGRKPVEDDGSVVVDYVWSLWEKGKLIEGADPRLMGKYDAVDMERMLLVGLLCVHPDQSKRPTVREAARMLNKEAALPLLPPVKPRLRIRPISPQTHHVLGDCLNTDEPPYFTPRSHFY* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2168 670 CDD STKc_IRAK 357 624 - -
Vra8g2168 670 Gene3D - 19 255 - -
Vra8g2168 670 SMART serkin_6 351 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2168 670 ProSitePatterns Legume lectins beta-chain signature. 126 132 IPR019825 -
Vra8g2168 670 SUPERFAMILY Protein kinase-like (PK-like) 335 641 IPR011009 -
Vra8g2168 670 CDD lectin_legume_LecRK_Arcelin_ConA 20 243 IPR001220 GO:0030246
Vra8g2168 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
Vra8g2168 670 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.1 24 649 - -
Vra8g2168 670 Pfam Protein kinase domain 352 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2168 670 PANTHER - 24 649 - -
Vra8g2168 670 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 243 IPR013320 -
Vra8g2168 670 ProSiteProfiles Protein kinase domain profile. 351 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2168 670 Gene3D Transferase(Phosphotransferase) domain 1 430 628 - -
Vra8g2168 670 ProSitePatterns Protein kinases ATP-binding region signature. 357 379 IPR017441 GO:0005524
Vra8g2168 670 Pfam Legume lectin domain 20 244 IPR001220 GO:0030246
Vra8g2168 670 Gene3D Phosphorylase Kinase; domain 1 312 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2168 Vra-Chr8 40053650 40055750 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2168 9 669 Receptor kinase-like Gene Family AT5G42120 52.518 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vra8g2168 Pkinase 2.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2168 - - gmx:100783805 977.622