Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2167 ATGGCAGATCTTGTTAGCTACAGGAATGCCGACCGTGACATCGACCAAGATGAATTGTCTTTAATCTGGATATCAAGCAGTGGAGAAAGAAATCTGAAACTATCTTCTGTCTCAAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAAAGATATCTGCGTCCTGAGAAGGAGTATCTTTCTTTTTCACTTATTTACAACAACGGGAAGCGGTCCCTTGATCTGATTTGCAAGGATAAAGTTGAGGCAGAAGTGTGGATTACTGGTCTCAAGGCACTGATATCTTCAGGTCAAGGTGGGCGTTCCAAAATTGATGGATGGAGTGATGGAGGCCTCTATCTTGATGACGGCAGAGACTTGACATCAAATAGTCCAAGTGAAAGTTCAGTTAGTGCTTCACGAGACATCAGTTCTCCTGACATTTCTGTTAGTCTGGCAAATACTTCTCCACAATCCTTTCACTCTGAAAATACTGTAAATTTTGATAGGTCACATGCACCATCAAACCCATCAAATATGCAAGTGAAAGGATCTAGTTCAGATGTTTTTCGTGTTAGTGTCTCAAGTGCCCCCAGCACATCTAGTCATGGGTCTGCACCTGACGATTATGATGCTCTTGGGGATGTATACATATGGGGGGAGGTTATCTGTGAGAATGTTGTAAAAGTTGGAGCTGATAAAAGTGCTAGTTATTTCAGTCCAAGAACAGATATTCTCCTCCCCAGGCCACTGGAGTCGAATGTGGTTTTAGATGTGCTTCAAATATCATGTGGTGTTAAACATGCTGCTCTAGTCACAAGGCAGGGTGAACTTTTCACATGGGGTGAAGAATCTGGTGGACGCCTTGGCCATGGTGTTGGGAAGAATGTGATTCAACCTCGTCTAGTTGACGCCATGACTTCTGCAACTGTTGATTTTGTTGCCTGTGGGGAGTTCCATACCTGTGCTGTTACGATGTTTGGGGAACTGTATACATGGGGTGATGGTACTCATAATGCTGGGCTTCTTGGTCATGGTACTGATGTTAGTCATTGGATACCAAAGAGAATTGCAGGTCCGCTAGAGGGGCTTCAAGTTGCGTTAGTCACTTGTGGTCCATGGCATACAGCCTTGATAACCTCAACTGGTCAGCTCTTTACATTTGGGGATGGAACATTTGGTGTCCTCGGCCATGGAGATAGGGAAAATGTTCCGTATCCAAGAGAAGTAGAATCCTTGTCTGGGTTGAGGACAATAGCTGTTGCATGTGGAGTGTGGCATACTGCAGCTGTTGTAGAGGTTATTGTGACTCAATCAAGTGCTAGTGTATCGTCAGGTAAATTGTTTACTTGGGGTGATGGAGATAAAAACCGTCTTGGACATGGAGACAAGGATGCTCGGCTTGAACCAACTTGCGTACCTTCACTTATTGATTACAATTTTCATAGAATTGCTTGTGGGCACAGTTTGACAGTAGGGCTGACAACATCCGGTCAAGTTTTTACAATGGGAAGCACGGTTTATGGTCAGCTTGGGAATCCCCAGTCGGATGGAAAGCTGCCATGTTTGGTTGAAGACAAGCTTGCAGGAGAATCTGTTGAAGAAATTGCATGCGGGGCTTATCATGTTGCTGTTTTAACGTGCAAAAATGAGGTTTACACTTGGGGAAAGGGAGCAAATGGGAGATTGGGTCATGGAGATGTTGAAGATAGAAAAACACCAACCTTGGTTGAAGCCTTGAAAGATAGACATGTGAAATATATTGCTTGTGGTTCAAACTACTCTGCAGCCATATGCCTTCATAAGTGGGTATCCGGTGCTGAGCAGTCTCAGTGCTCTGCTTGTAGACAAGCGTTTGGATTCACTAGAAAGAGGCACAACTGTTATAATTGTGGGCTAGTGCACTGTCATTCATGTAGTTCTCGGAAAGCATTAAGAGCTGCACTGGCTCCAAATCCTGGAAAGCCATATCGCGTATGTGATTCATGTTTTGTAAAATTGAACAAGGTTTCTGAATCAGGCAATAATAATCGAAGGAACGCTCTGCCTCGTTTGTCAGGTGAAAACAAGGACAGATTAGAGAAGTCTGACCTAAGATTAACCAAGACAGCTGTCCCTTCTAATATGGATTTGATAAAGCAGCTTGATAGCAAGGCAGCCAAACAGGGGAAGAAGGCTGATACATTCTCTCTGGTTCGCAACCCACAACCACAATCTTTGCTACAGCTTAAAGATGTTGTCCTGTCTACAGCTGTTGATTTGAAGCGAACAGCTCCAAGACCTGTGCTGACGCCATCTGGAGTGAGTTCCAGGTCTGTGTCTCCATTCTCTAGAAGACCAAGCCCCCCTCGTTCAGCTACACCTATTCCAACAACATCGGGGCTTTCCTTCTCAAAAAGTATTGCTGATAGTTTGAAGAAAACAAATGAGCTTTTGAATCAGGAAGTATTAAAGTTACGTGCTCAGGTTGAGACCCTGAGACAGAGATGTGAAATGCAAGAATTAGAGCTTCAAAGGTCATCAAAAAAGACTCAGGAGGCTATGGCTCTGGCTGCCGAGGAATCTGCCAAAGCTAAGGCTGCAAAGGAAGTTATAAAGTCACTTACAGCACAGCTCAAAGATCTGGCTGAGAGGCTTCCCCCTGGCGCTTATGATGCGGAGAATATCAGACCAGCTTACCTGCCAAATGGTCTGGAGCCAAATGGAATTCACTATCCAGAAATAAATGGGGAGCGTCACACCAGGGCCGAGTCAATCAGTGGCTCTAGTTTGGCTTCCATTGGAATTGAATCATCCCTGCCGAGCAGAATCGAAGGCACTCTGACCGGAAACTATGGAGCTAATCTTTACCAGCAAAATCGGGGATCTGTAATCCCTAATGGGACAGATGAGTACCCAGATGTTAAATTGCCAAACGGCAGCAGCAGCGTGATCCAGACAAGTGGTAGTACTGCATCAGATACTGTTGATGGTAGGGATTCTGGAAATTTTCAAGATGATGAGAGTGGTTTGAGATCAAGGAATGCCATAATACCTGCTAATAGTAGTCAAGTTGAGGCAGAATGGATTGAACAATACGAACCTGGTGTCTATATAACTCTTGTTGCCCTGCGTGATGGAACAAGAGATCTGAAACGAGTGCGGTTCAGCCGGCGAAGATTCGGTGAGCACCAAGCTGAGACTTGGTGGTCGGAGAACCGTGATAGGGTATACGAGAGGTACAACGTTCGAAGCAGCGACAAATCTTCCGGCCAAGGGGCACGTAAGGCAGATGGTGGTGGTTCACCTGTTTTATAA 3276 0.449 MADLVSYRNADRDIDQDELSLIWISSSGERNLKLSSVSRIIPGQRTAVFQRYLRPEKEYLSFSLIYNNGKRSLDLICKDKVEAEVWITGLKALISSGQGGRSKIDGWSDGGLYLDDGRDLTSNSPSESSVSASRDISSPDISVSLANTSPQSFHSENTVNFDRSHAPSNPSNMQVKGSSSDVFRVSVSSAPSTSSHGSAPDDYDALGDVYIWGEVICENVVKVGADKSASYFSPRTDILLPRPLESNVVLDVLQISCGVKHAALVTRQGELFTWGEESGGRLGHGVGKNVIQPRLVDAMTSATVDFVACGEFHTCAVTMFGELYTWGDGTHNAGLLGHGTDVSHWIPKRIAGPLEGLQVALVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVPYPREVESLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKDARLEPTCVPSLIDYNFHRIACGHSLTVGLTTSGQVFTMGSTVYGQLGNPQSDGKLPCLVEDKLAGESVEEIACGAYHVAVLTCKNEVYTWGKGANGRLGHGDVEDRKTPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCFVKLNKVSESGNNNRRNALPRLSGENKDRLEKSDLRLTKTAVPSNMDLIKQLDSKAAKQGKKADTFSLVRNPQPQSLLQLKDVVLSTAVDLKRTAPRPVLTPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSIADSLKKTNELLNQEVLKLRAQVETLRQRCEMQELELQRSSKKTQEAMALAAEESAKAKAAKEVIKSLTAQLKDLAERLPPGAYDAENIRPAYLPNGLEPNGIHYPEINGERHTRAESISGSSLASIGIESSLPSRIEGTLTGNYGANLYQQNRGSVIPNGTDEYPDVKLPNGSSSVIQTSGSTASDTVDGRDSGNFQDDESGLRSRNAIIPANSSQVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENRDRVYERYNVRSSDKSSGQGARKADGGGSPVL* 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2167 1091 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 601 672 IPR013083 -
Vra8g2167 1091 Coils Coil 795 836 - -
Vra8g2167 1091 MobiDBLite consensus disorder prediction 966 985 - -
Vra8g2167 1091 SUPERFAMILY PH domain-like 15 94 - -
Vra8g2167 1091 Gene3D - 432 600 IPR009091 -
Vra8g2167 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 439 490 IPR000408 -
Vra8g2167 1091 Pfam FYVE zinc finger 595 661 IPR000306 GO:0046872
Vra8g2167 1091 MobiDBLite consensus disorder prediction 1069 1091 - -
Vra8g2167 1091 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 255 265 IPR000408 -
Vra8g2167 1091 Gene3D - 12 100 IPR011993 -
Vra8g2167 1091 CDD FYVE_like_SF 604 657 - -
Vra8g2167 1091 MobiDBLite consensus disorder prediction 966 996 - -
Vra8g2167 1091 MobiDBLite consensus disorder prediction 756 773 - -
Vra8g2167 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 269 317 IPR000408 -
Vra8g2167 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 321 372 IPR000408 -
Vra8g2167 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 438 485 IPR000408 -
Vra8g2167 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 376 424 IPR000408 -
Vra8g2167 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 544 591 IPR000408 -
Vra8g2167 1091 Pfam Regulator of chromosome condensation (RCC1) repeat 490 539 IPR000408 -
Vra8g2167 1091 SUPERFAMILY FYVE/PHD zinc finger 595 667 IPR011011 -
Vra8g2167 1091 Coils Coil 844 871 - -
Vra8g2167 1091 MobiDBLite consensus disorder prediction 753 786 - -
Vra8g2167 1091 ProSiteProfiles PH domain profile. 1 95 IPR001849 -
Vra8g2167 1091 PRINTS Chromosome condensation regulator RCC1 signature 252 265 IPR000408 -
Vra8g2167 1091 PRINTS Chromosome condensation regulator RCC1 signature 271 287 IPR000408 -
Vra8g2167 1091 PRINTS Chromosome condensation regulator RCC1 signature 321 337 IPR000408 -
Vra8g2167 1091 PRINTS Chromosome condensation regulator RCC1 signature 362 378 IPR000408 -
Vra8g2167 1091 PRINTS Chromosome condensation regulator RCC1 signature 378 392 IPR000408 -
Vra8g2167 1091 PRINTS Chromosome condensation regulator RCC1 signature 480 498 IPR000408 -
Vra8g2167 1091 PRINTS Chromosome condensation regulator RCC1 signature 538 559 IPR000408 -
Vra8g2167 1091 MobiDBLite consensus disorder prediction 147 177 - -
Vra8g2167 1091 Gene3D - 143 431 IPR009091 -
Vra8g2167 1091 Pfam Transcription factor regulating root and shoot growth via Pin3 1012 1067 IPR013591 -
Vra8g2167 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 321 375 IPR000408 -
Vra8g2167 1091 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 14 1074 - -
Vra8g2167 1091 SUPERFAMILY RCC1/BLIP-II 206 596 IPR009091 -
Vra8g2167 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 269 320 IPR000408 -
Vra8g2167 1091 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 362 372 IPR000408 -
Vra8g2167 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 207 268 IPR000408 -
Vra8g2167 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 491 542 IPR000408 -
Vra8g2167 1091 SMART fyve_4 593 662 IPR000306 GO:0046872
Vra8g2167 1091 Pfam Pleckstrin homology domain 29 94 IPR001849 -
Vra8g2167 1091 MobiDBLite consensus disorder prediction 668 688 - -
Vra8g2167 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 543 594 IPR000408 -
Vra8g2167 1091 Pfam Transcription factor BRX N-terminal domain 846 881 IPR027988 -
Vra8g2167 1091 CDD PH_PLC_plant-like 14 95 - -
Vra8g2167 1091 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 599 661 IPR017455 -
Vra8g2167 1091 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 414 424 IPR000408 -
Vra8g2167 1091 ProSiteProfiles BRX domain profile. 1013 1068 IPR013591 -
Vra8g2167 1091 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 376 427 IPR000408 -
Vra8g2167 1091 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 14 1074 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2167 Vra-Chr8 40033829 40041409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2167 1014 1084 Major Intrinsic Protein MIP AT1G31880 46.479 1.31e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2167 - - gmx:100783270 1940.62