Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2161 ATGGAAAACAACGACATCTTAGCTCCGTCTGATGCCTCGTTCTTTGACCAGATTGTGGCCACGGAGCAACCACACAGCCCCATACACTCCGACCCCTCCTATCCTCTCATCGAAACCTTCGTCGACCTTCTCAACGTCGACACCAAACATTTTGATTTCGAAATGTTCAACTCTTCACTGTCTCCTCCGCCGCCAACCGCTCCTCTAGGGTCCGTTCACTCCGAAACCTCAGAGAAACCCAACGAGCAGACCTCGACGCCTGCACCGGTAGGGTCCATAGACGGACTCGACTGTGGAAAGTCCGTGGTATCGGATGATCTCTGCATGGCAGGCAGTGCTAAGAATTCCGGAGAGAACAAGCAGAAGCGGCATCGGCAGAACGTTCCCCTGGACGCGTCACTGACAGCTTTGATGCAGGCCGCGCCAGCGATTTCTTTGGCGAGGAAGCCCATGGGGCCGGAGGAGCTTGCTGAACTTGCCATGGTTGATCCCAAGAAGGCTAAGAGGATTGTTGCCAATAGGGAATCTGCTGCTAAATCAAAGGAGAGGAAAAAGCGTTATTTGATAGAGTTGCAAAAGAATGTGGAATTGCTTGAAATTCAAATAACTAACGTGTTTGATAATATTTGCATGCTTGAGATGGCGAATAGAGGAAGGGCTGTTCATGTAAAGGAGCGCAGAGTAAAATTAGACGTCATGCGAGAAGAAGACCGAATTAAAGATGCTCTGAGTGCTGCGTTGAATGGAGAAATTCAGGGCCTGAAGGATGAAAATAGAAATCTACAAGTTTTATTGAGTTGTTCTCCAGGGAACTTTTTCTCTCCATTCTCTTCCAAGTTACCTCTGCATCAGTTTCATAATCCTCCATCTCAGCAGCATCTGAACCCTCAGCAACCACAACTCTCCATGCGTAGTCCTCTTCCTCCGCCTGGCTCGAGCTTCACCGGGGGACATTATGGCCCTAATAACTTCTCCAACTTCAATCAGAAAAACTAG 996 0.488 MENNDILAPSDASFFDQIVATEQPHSPIHSDPSYPLIETFVDLLNVDTKHFDFEMFNSSLSPPPPTAPLGSVHSETSEKPNEQTSTPAPVGSIDGLDCGKSVVSDDLCMAGSAKNSGENKQKRHRQNVPLDASLTALMQAAPAISLARKPMGPEELAELAMVDPKKAKRIVANRESAAKSKERKKRYLIELQKNVELLEIQITNVFDNICMLEMANRGRAVHVKERRVKLDVMREEDRIKDALSAALNGEIQGLKDENRNLQVLLSCSPGNFFSPFSSKLPLHQFHNPPSQQHLNPQQPQLSMRSPLPPPGSSFTGGHYGPNNFSNFNQKN* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2161 331 Coils Coil 181 208 - -
Vra8g2161 331 Gene3D - 164 217 - -
Vra8g2161 331 Pfam Basic region leucine zipper 163 213 IPR004827 GO:0003700|GO:0006355
Vra8g2161 331 MobiDBLite consensus disorder prediction 70 90 - -
Vra8g2161 331 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 25 302 - -
Vra8g2161 331 MobiDBLite consensus disorder prediction 316 331 - -
Vra8g2161 331 SMART brlzneu 161 225 IPR004827 GO:0003700|GO:0006355
Vra8g2161 331 Coils Coil 244 264 - -
Vra8g2161 331 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN-RELATED 25 302 - -
Vra8g2161 331 MobiDBLite consensus disorder prediction 283 331 - -
Vra8g2161 331 MobiDBLite consensus disorder prediction 283 301 - -
Vra8g2161 331 CDD bZIP_plant_RF2 166 217 IPR044759 GO:0003700|GO:0006355
Vra8g2161 331 SUPERFAMILY Leucine zipper domain 165 212 IPR046347 GO:0003700|GO:0006355
Vra8g2161 331 MobiDBLite consensus disorder prediction 57 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2161 Vra-Chr8 39904582 39909649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2161 112 255 bZIP Transcription Factor Family AT2G40620 39.456 4.59e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra8g2161 bZIP_2 6.4e-07 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2161 K20557 - gmx:102664725 201.06