Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2159 ATGGGGAGGAAGAAGCCGACTGCGAGGGACGAGGAGAACGCCTCGCAGCAAGGCGGTGGCGGGAAATCTAAGAAGAAGGCCGTGGTCATCGACGACGATGAGTATTCCATTGGAACAGAGCTCTCTGAGGAGCCGGCGCTGGAAGAGAAACCCGCTGCGGCGGGAAAGAAGAAAAGTAAGAAAGGCAATGCTAAAAGTAAGAGTAACGATGATGATGTTGACGATGATGAAGATGTGCCTGAAGTTGTGTTTGCTGGGAAGAAGAAGGGGAAAAACAAGAAAGGCGGTGGGAGCACTGCGTTTACTGCATCTGGCTTTAGTTTGCTTGGTGACGAGGAAGGTGACGAAGAAGATAAGTCTGAAGAGGATGGACCTGCGGTTAGTTTTTCGGGTAAGAAGGCATCGAACAAAGGAGGTGGTAGTTTGTTCAATGCATCGGCTTTTGATGCTATCGACGATGATGCTGGTGGTGAGGAGGAGGAGGAGGAGGATGAGCCGGTGGTTAGCTTTACTGGAAAGAAAAAGTCCTCGAAGGTTTCGAAGAAAAGCGGTGGTAGTTTGTTCGCTGCCTCGGCTTTTGATGCCATTGATGATGGTGGGGATGGTGAGGTGGCAGATGATAAGAATAATGATTTTGATGACGATGAACCTGTTATTACTTTCACGGGGAAGAAGAAGTCCTCGAAAGGCAGTAAGAAGGGTGGTGCTGTGTTTTCTGCCTCTGTTCTCACTGAAATCGATGATGATGAGGAGAAGGAGGATGGTGGTGGTGATGATGACGATGACATTGGACCAATTACTTTCTCTGGCAAGAAGAAGAAGTCTTCCAAGAAAGCTGCAAGTTCCGGTGGCAAAGCTGTTTCTGTTGAGGATGATGTTTCTGTACCCGAGTTTGGTAAGGATGGTGATGACATGGATGAGGATGATGTTTCTTTAGTTTCGTTTTCAGGTAAAAAGAAGTCCTCTAAAAAGAAGGGCAGTAGCACTGCTGCCAAAGGGAGTGAGGAAAATGCGGATGTAGTTGAGCCTGAGGCACCCACTATTGGTAGTGCTGATGCTAGCAACAGCAATGTAAATAAGAGTGAAGGAGTTGCTGAAACTTCCAAAAACAAGAAGAAGAATAAGAAAAAGAGTGGGAGAACTGCTCAAGAGGAGGAAGATTTGGATAAGCTTCTTGCAGAGCTCGGTGAGGCTCCTATACCAAAACCAACTGCTTCTGCACCACAGGATGATAAAGTTCAGCCTACTCCTGAAGTAGGTCCTGCTGCTGCTGATGCTTCTGGGGAAAAGGAGGGTGAAGAGGAGGTGGTAGAATCAGCTGCTGCAAAGAAGAAAAAGAAGAAAAAGGAAAAGGAAAAGGAAAAGAAGGCAGCTGCCGCTGCCGCAGCAGCAGCAGGAAGTGCACCAGAAAAAGAATTAGCTGAAGTTAAAGCTGAGGCAATTGAACCAAAGAAGAATGACTCAAAGGCTAAGGCAGCTGATAAGAAAGTGCCAAAGCATGTTAGAGAGATGCAAGAGGCACTAGCTCGAAGAAAAGAGGCTGAAGAAAAGAAGAAACGAGAAGAGGAAGAGAGGTTAAAGAAGGAAGAAGAGGAGCGACGCAGGCAAGAGGAACTTGAGAGACAGGCAGAAGAAGCTAAACGCAGAAAGAAGGAAAGAGAAAACGAAAAAAGACAGAAAAAAAAGCAAGAAGGTAAATTATTAACTGGTAAGCAGAAGGAAGAAGCACGTCGTTTGGAGGCAATGAGGAGGCAGATTCTCAATAGCACTGGGGGTCTGACTCTCCCTTCTGGGGACTCTGGTGCTCCAGCTAAAAAACCCATATACCAGACAAAGAAGGCAAAACCAAATAATAGAAATCAGAATGGTGCTGCTGCTCAGACAGCTGAAATTGTCGAAGCGAAGGAGACTGCTACTGATGTAGTTTCTGAGGAACCAGTGAATATTGAAGAAGTGGAGTCGATTCAGGTGGATGATAAAGTTGAACTTCCTGTCACTGCCGAAGATGATGTGGTGGAAGACGAAGAAGATGATGAATGGGATGCAAAAAGCTGGGATGATGTTAATCTGAATGCCAAAGGTGCATTTGCAGACGAAGAGGCTGACTCCGAACCTAAACCTGTTATCAAAAAGGAGATTAAAAATGCCATGCCTATTCAGAATGCCGGGGCTGCTAGTGCAACTGTTTCTGGGCCCGTGACCGTTGAAACTGAAAATGGAAAGCAAGCTAATGACAGAAATAAGAAGCAAGATTCTGATTTGAATAGGTCAAAAAAATCTGCTACCCCTCCTCAGCCTAATGATGAAAACCTCCGCTCCCCAATTTGCTGTATCATGGGGCACGTGGATACTGGGAAGACTAAGCTGTTGGATTGTATTCGTGGTACTAATGTTCAGGAGGGTGAGGCTGGAGGTATCACACAACAGATTGGAGCAACATACTTTCCTGCTGAGAACATACGTGAAAGAACAAAGGAACTGAAAGCTGATGCCAAGCTGAAAGTTCCTGGTCTACTGGTTATTGACACCCCTGGGCACGAGTCATTTACTAACTTGAGGTCTCGGGGTTCAGGCCTATGTGATATTGCAATTTTGGTTGTTGACATTATGCATGGGTTAGAGCAACAAACAATAGAGTCACTAAATCTATTAAAAATGAGGAATACAGAATTCATTGTTGCCTTAAATAAGGTTGACAGGCTTTATGGATGGAAAACATGTCGCAATTCCCCAATTGTCAAAGCACTGAAGCAGCAGACTAAAGATGTTCAAAATGAGTTCAATATGAGGCTCACTCAGATTGTTACTCAATTCAAAGAACAAGGGATGAATACTGAGTTGTACTATAAAAACAAAGAAATGGGAGAAACATTCAGCATTGTGCCTACAAGTGCAATAAGTGGCGAAGGAATTCCCGATTTGTTATTACTTTTGGTTCAATGGACCCAAAAAACAATGGTTGAGAAACTTACGTACAGTGAAGAAGTGCAGTGTACTGTTTTAGAGGTTAAGGTTGTTGAAGGCCATGGAACTACTATTGATGTTGTTTTAGTTAATGGTGTTCTTCATGAAGGAGAACAAATAGTTGTCTGTGGAATGCAGGGTCCAATTGTTACCACAATTCGAGCTTTATTGACTCCTCATCCAATGAAGGAACTTCGCGTCAAGGGAACATATCTTCATCACAAAGAAATCAAAGCTGCAATGGGTATAAAAATCACTGCCCAGGGCCTTGAGCATGCCATTGCTGGCACTGGTTTATATGTGGTGAAGCCTGATGATGATTTGGAAGATATCAAAGAAGCAGCAATGGAAGATATGCGATCAGTTATGAGCAGGATTGACAGGACTGGTGAAGGTGTTTGTGTACAGGCATCTACCCTTGGTTCCTTAGAAGCATTACTGGAGTTTCTGAAAACTCCAGAAGTTAGTATCCCTGTTAGTGGTATAAGCATTGGTCCTGTTCACAAAAAAGATGTAATGAAGGCCAGTGTAATGCTTGAAAAAAAGCGAGAGTATGCAGCAATATTGGCATTTGATGTCAAAGTTACACCTGAGGCTAGGGAACTGGCAGATGAATTGGGTGTGAAGATATTTATTGCTGATATCATTTATCATCTGTTTGATCAATTTAAAGCGTATATTGACAACATTAAAGAGGAGAAAAAGAAAGAAGCTGCTGATGAGGCAGTCTTCCCATGCGTTTTTAAAATCTTACCAAATTGCATTTTCAACAAGAAGGACCCAATTGTTTTGGGAGTTGATATTCTTGAAGGCATTGCAAAGATTGGGACTCCAATTTGCATTCCTTCCAGAGAGTTCATTGATATTGGCCGCATTGCCTCCATTGAAAATAACCACAAACCTGTTGATTATGCCAAGAAGGGGCAGAAAGTAGCCATTAAGATTGTTGGCAGCAATCCTGAAGAGCAACAAAAAATGTTTGGGAGACATTTTGAGATCGACGATGAACTTGTAAGCCATATTTCACGGAGATCTATTGATATTCTCAAAGCTAATTATCGGGATGATCTATCTATGGAGGAATGGAGGTTGGTTGTGAAATTGAAGAATCTTTTCAAGATACAATGA 4092 0.4333 MGRKKPTARDEENASQQGGGGKSKKKAVVIDDDEYSIGTELSEEPALEEKPAAAGKKKSKKGNAKSKSNDDDVDDDEDVPEVVFAGKKKGKNKKGGGSTAFTASGFSLLGDEEGDEEDKSEEDGPAVSFSGKKASNKGGGSLFNASAFDAIDDDAGGEEEEEEDEPVVSFTGKKKSSKVSKKSGGSLFAASAFDAIDDGGDGEVADDKNNDFDDDEPVITFTGKKKSSKGSKKGGAVFSASVLTEIDDDEEKEDGGGDDDDDIGPITFSGKKKKSSKKAASSGGKAVSVEDDVSVPEFGKDGDDMDEDDVSLVSFSGKKKSSKKKGSSTAAKGSEENADVVEPEAPTIGSADASNSNVNKSEGVAETSKNKKKNKKKSGRTAQEEEDLDKLLAELGEAPIPKPTASAPQDDKVQPTPEVGPAAADASGEKEGEEEVVESAAAKKKKKKKEKEKEKKAAAAAAAAAGSAPEKELAEVKAEAIEPKKNDSKAKAADKKVPKHVREMQEALARRKEAEEKKKREEEERLKKEEEERRRQEELERQAEEAKRRKKERENEKRQKKKQEGKLLTGKQKEEARRLEAMRRQILNSTGGLTLPSGDSGAPAKKPIYQTKKAKPNNRNQNGAAAQTAEIVEAKETATDVVSEEPVNIEEVESIQVDDKVELPVTAEDDVVEDEEDDEWDAKSWDDVNLNAKGAFADEEADSEPKPVIKKEIKNAMPIQNAGAASATVSGPVTVETENGKQANDRNKKQDSDLNRSKKSATPPQPNDENLRSPICCIMGHVDTGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENIRERTKELKADAKLKVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVVDIMHGLEQQTIESLNLLKMRNTEFIVALNKVDRLYGWKTCRNSPIVKALKQQTKDVQNEFNMRLTQIVTQFKEQGMNTELYYKNKEMGETFSIVPTSAISGEGIPDLLLLLVQWTQKTMVEKLTYSEEVQCTVLEVKVVEGHGTTIDVVLVNGVLHEGEQIVVCGMQGPIVTTIRALLTPHPMKELRVKGTYLHHKEIKAAMGIKITAQGLEHAIAGTGLYVVKPDDDLEDIKEAAMEDMRSVMSRIDRTGEGVCVQASTLGSLEALLEFLKTPEVSIPVSGISIGPVHKKDVMKASVMLEKKREYAAILAFDVKVTPEARELADELGVKIFIADIIYHLFDQFKAYIDNIKEEKKKEAADEAVFPCVFKILPNCIFNKKDPIVLGVDILEGIAKIGTPICIPSREFIDIGRIASIENNHKPVDYAKKGQKVAIKIVGSNPEEQQKMFGRHFEIDDELVSHISRRSIDILKANYRDDLSMEEWRLVVKLKNLFKIQ* 1364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2159 1363 Gene3D Translation factors 1226 1363 - -
Vra8g2159 1363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 771 1062 IPR027417 -
Vra8g2159 1363 CDD IF2_eIF5B 774 984 - -
Vra8g2159 1363 Coils Coil 430 462 - -
Vra8g2159 1363 Pfam Elongation factor Tu domain 2 1010 1085 IPR004161 GO:0005525
Vra8g2159 1363 MobiDBLite consensus disorder prediction 152 166 - -
Vra8g2159 1363 MobiDBLite consensus disorder prediction 736 772 - -
Vra8g2159 1363 Pfam Translation-initiation factor 2 1100 1212 IPR023115 -
Vra8g2159 1363 MobiDBLite consensus disorder prediction 378 393 - -
Vra8g2159 1363 PRINTS GTP-binding elongation factor signature 775 788 IPR000795 GO:0003924|GO:0005525
Vra8g2159 1363 PRINTS GTP-binding elongation factor signature 839 849 IPR000795 GO:0003924|GO:0005525
Vra8g2159 1363 PRINTS GTP-binding elongation factor signature 855 866 IPR000795 GO:0003924|GO:0005525
Vra8g2159 1363 PRINTS GTP-binding elongation factor signature 891 900 IPR000795 GO:0003924|GO:0005525
Vra8g2159 1363 MobiDBLite consensus disorder prediction 427 445 - -
Vra8g2159 1363 MobiDBLite consensus disorder prediction 349 364 - -
Vra8g2159 1363 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 1096 1225 IPR036925 -
Vra8g2159 1363 Pfam Elongation factor Tu GTP binding domain 775 983 IPR000795 GO:0003924|GO:0005525
Vra8g2159 1363 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 1 1363 IPR015760 -
Vra8g2159 1363 Gene3D - 1115 1219 IPR036925 -
Vra8g2159 1363 MobiDBLite consensus disorder prediction 741 756 - -
Vra8g2159 1363 Gene3D Translation factors 994 1114 - -
Vra8g2159 1363 TIGRFAM small_GTP: small GTP-binding protein domain 776 902 IPR005225 GO:0005525
Vra8g2159 1363 CDD aeIF5B_II 995 1105 - -
Vra8g2159 1363 MobiDBLite consensus disorder prediction 244 261 - -
Vra8g2159 1363 CDD IF2_aeIF5B_IV 1234 1329 - -
Vra8g2159 1363 Gene3D - 765 993 IPR027417 -
Vra8g2159 1363 MobiDBLite consensus disorder prediction 1 626 - -
Vra8g2159 1363 Coils Coil 497 566 - -
Vra8g2159 1363 MobiDBLite consensus disorder prediction 659 686 - -
Vra8g2159 1363 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 771 987 IPR000795 GO:0003924|GO:0005525
Vra8g2159 1363 SUPERFAMILY Translation proteins 1230 1362 IPR009000 -
Vra8g2159 1363 MobiDBLite consensus disorder prediction 472 582 - -
Vra8g2159 1363 PANTHER PHOTOSYSTEM II PROTEIN D1 1 1363 - -
Vra8g2159 1363 MobiDBLite consensus disorder prediction 668 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2159 Vra-Chr8 39883527 39892028 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2159 1 221 Eukaryotic Initiation Factors Gene Family AT1G76810 38.934 1.81e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2159 K03243 - gmx:100814875 1845.86