Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2155 ATGGAAGGGAATTTGCCCCAGGGAAGTATAATTCAAGGTGGGACGTCTTTCGGTGGCTTTGATTTGCCGGGATCAATTCGGGTTCAGCATCAAGCACAACATCCACATGCCATGCACCAACATCAAACTCATCCGCGTCAAGGATCTTCTGTACATTCCACAGTTCATGATGTTTTCCCTCTTACAATGGGAACCCTGCAGAACTGTGACCAAACTATTTCAATGACAGAGTTTAGTAAAGAAAACAGAAGCAAAAACTCAGCGAGTGAGGAAGACGAGCCGAGCTTTACCGAGGATGGTGTTGATTGTCACCATGAAGCTAGTAGAGGGAAGAAAGGATCACCTTGGCAGCGGGTTAAGTGGACTGATAAGATGGTAAGACTTCTGATAACAGCTGTTTCTTATATTGGTGAGGATGTGACTGTTGATGGCGGTGGCAGTGGAAGAAGGAAGTTTGCAGTATTACAGAAGAAGGGTAAGTGGAAATCTGTTTCCAAGGTCATGGCTGAGAGGGGTTATCATGTTTCACCTCAGCAATGCGAGGATAAATTCAATGATCTGAATAAAAGATATAAAAAGCTTAACGATATGCTTGGGAGAGGCACTTCTTGTCAGGTTGTTGAAAATCCCGCTCTGTTGGATGTGATAGATTTTCTTTCTGATAAAGAAAAGGACGATGTTCGAAAAATATTAAGCTCAAAACACCTGTTCTATGAGGAGATGTGTTCTTACCATAATGGTAACAGATTGCATTTACCCCATGATCCTGCATTGCAACGTTCACTCCAGTTAGCGCTGCGAAATAGGGATGATCATGACAACGATGATATGAGAAGGTCCCATCATGACGATCACGGCGAAGATGATCAAGATGTGGAAATTGATGATCATGATGACTTTGAAGAGAATTGTGCTTCTCATGGTGATAGTAGAGGAATATATGCACCATTAGGTGGACCTGTGAAGAAACTGAAGCAAGGCCAAGGGCAAGAAGATGGTAATACTTTTGGCAATTCTCTAAATTGTCAGGACTACAACAGAAGTTCGTATCCCCATGGGCAGATGGTCCAATCTGATGTGAATCAAGCTTTACCTGAAAGCATGAGAGCAGCTTGGTTACAGAAGCAATGGGTTGAATCTCGCTCACTTCAGTTAGAGGAACAAAAACTACAGATTCAGGTTGAGATGCTGGAACTAGAGAAACAGAGATTCAAGTGGCAGAGGTTTAGTAAGAAAAAGGATCGGGAGTTGGAGAAGCTAAGTCTAGAAAATGAAAGAATGAAGCTTGAAAATGAACGTATTACTTTAGAACTTAAGCGAAAGGAAATGAGCACTGGCTTTAAATAG 1347 0.4217 MEGNLPQGSIIQGGTSFGGFDLPGSIRVQHQAQHPHAMHQHQTHPRQGSSVHSTVHDVFPLTMGTLQNCDQTISMTEFSKENRSKNSASEEDEPSFTEDGVDCHHEASRGKKGSPWQRVKWTDKMVRLLITAVSYIGEDVTVDGGGSGRRKFAVLQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPALLDVIDFLSDKEKDDVRKILSSKHLFYEEMCSYHNGNRLHLPHDPALQRSLQLALRNRDDHDNDDMRRSHHDDHGEDDQDVEIDDHDDFEENCASHGDSRGIYAPLGGPVKKLKQGQGQEDGNTFGNSLNCQDYNRSSYPHGQMVQSDVNQALPESMRAAWLQKQWVESRSLQLEEQKLQIQVEMLELEKQRFKWQRFSKKKDRELEKLSLENERMKLENERITLELKRKEMSTGFK* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2155 448 Coils Coil 380 402 - -
Vra8g2155 448 MobiDBLite consensus disorder prediction 35 53 - -
Vra8g2155 448 MobiDBLite consensus disorder prediction 78 115 - -
Vra8g2155 448 MobiDBLite consensus disorder prediction 269 338 - -
Vra8g2155 448 Gene3D - 121 193 - -
Vra8g2155 448 PANTHER FACTOR, PUTATIVE-RELATED 1 447 - -
Vra8g2155 448 MobiDBLite consensus disorder prediction 1 53 - -
Vra8g2155 448 MobiDBLite consensus disorder prediction 83 115 - -
Vra8g2155 448 PANTHER F16F4.11 PROTEIN-RELATED 1 447 - -
Vra8g2155 448 Coils Coil 410 444 - -
Vra8g2155 448 Pfam Myb/SANT-like DNA-binding domain 118 244 IPR044822 -
Vra8g2155 448 MobiDBLite consensus disorder prediction 269 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2155 Vra-Chr8 39844926 39848425 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vra8g2155 Myb_DNA-bind_4 6.2e-24 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2155 - - pvu:PHAVU_007G079600g 805.053