Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2154 ATGCTCGGGGACTCAGCTGTGTTGGGAGCGGGAGGTGGAAGTGGCGGCGGAGAAGGTGGCGCCTCCGCCGATGCAGTGGCCGGGGTCACTCATGACGGGGCGGTGGCAGCGAGGGGAGGCGGTGGGGGAGTTGGATCAAATTCAGGGGACGACGAAAGGGGTAGAATCGAAGAGGGAGAACGTAGCTTCGGTGGTAACCGGTGGCCCCGACAAGAGACTTTGGCGCTGTTAAGGATACGGTCGGATATGGACGTGGCGTTTCGAGATGCAAGTGTTAAGGGTCCTTTGTGGGAAGAAGTATCCAGGAAAATGGCAGAGCTTGGGTATCACAGAAGTTCCAAGAAGTGCAAAGAGAAATTCGAGAACGTGTACAAGTACCACAAGAGAACAAAAGAAGGTCGAAGTGGGAAGCAAGATGGAAAAACATATCGTTTCTTCGATCAACTACAAGCCCTTGAGAATCACACTCCAACACCCCACTCTCCCAAACCATCCCCTAAACTACCACAATCAGCACCATCAAGAGTAATTGCAGCAACAGCTGCATCATTGTCACTACCAATTGCAACAGCATCGACAACTGCTTCATCCTTGTCACTTCCAATTCCAACTACAATAACAACAGTACCAATGCAGCCAATACTGTCCAACACCACTCTCACTAGTACTGTCCCCCATATCACTGTTCCATCAACAACAACACTCCCTATAACCATACCCCAGCCCATGCTCACTACCCCATCAATACATCTCTCAACTCCTTCTTACCCTCCAACAAACCCTACCACCAACACAGCCCCACCACCTTCTTTCCCCACGCTCCCCACCGACACCTTCTCCAATTCTAGCTCCTCCTCCACCTCCTCCGACGAAACATTGGAAGGTAGGCGCAAAAGAAAGCGCAAGTGGAAGGACTTCTTCGAGAGACTAATGAAGGAAGTGATCCAGAAACAAGAGGATCTACAAAAGAAGTTCCTCGAAGCCATAGAGAAACGAGAACACGAAAGAATAGCAAGAGAAGAAGCATGGAGAGTCCAAGAGATGCAAAGAATCAATAGAGAAAGAGAAATCCTCGCACAGGAAAGATCCATAGCCGCAGCCAAAGACGCTGCCGTCATGTCATTCCTTCAAAAAGTAGCCGAACAACAAAACCTCGGTCAAGCATTAAACAGCATCAACCTCGTACAACAACCATCACAGCAACAACCTCAACCACCACTGCAACAATTACCACCATCTAGTGTAGCTCCGTCTCCTGTGCAACAACCATTGCCCGCGGTTGTTTCTCAACCATTGGTGTTTCCAGTGGTCTCACAAGTGACCAACATGGAGATAGTGAAAGTTGACAACAACAACAATAATAGTAGCGAGAATTTCACGCCGTCGAGTTCCTCGAGGTGGCCAAAGGTGGAGGTTCAGGCATTGATAAAGCTTCGAACGAACCTGGATCCAAAGTATCAAGAGAACGGACCAAAGGGTCCTCTGTGGGAGGAGATCTCATCCTCGATGAGAAAGCTCGGATACAACCGAAACGCGAAACGGTGTAAAGAGAAGTGGGAGAACATCAACAAGTATTTCAAGAAAGTGAAGGAAAGTAACAAGCGGAGACCGGAAGATTCGAAAACGTGTCCTTATTTCCACCAGCTCGACGCGCTGTACAGGCAGAAGAGCAAGGCGGAGGGCGTGGCGGCGGCGGTGAAGCCAGAAAGCACGGTGGCGCCGCTGATGGTGCGGCCGGAGCAGCAATGGCCACCTCAGGAGGAAACGATGAGGGATAGGGACATCAGAATGGAGGACGTGGAGAACGAAGAGGATGAGTACGAAGAAGAGAGAGAAGGAGAGGGAGAGGGAGAGGAAGAAGAAGATGACGAAGAGGATGAAGAAGGTGGTGGTGGTGGAAAATATGAGATAGTGGCGAACAAAACGAGTGGTGGTTCAGTTGCGGCATCGACAGAATAG 1959 0.5023 MLGDSAVLGAGGGSGGGEGGASADAVAGVTHDGAVAARGGGGGVGSNSGDDERGRIEEGERSFGGNRWPRQETLALLRIRSDMDVAFRDASVKGPLWEEVSRKMAELGYHRSSKKCKEKFENVYKYHKRTKEGRSGKQDGKTYRFFDQLQALENHTPTPHSPKPSPKLPQSAPSRVIAATAASLSLPIATASTTASSLSLPIPTTITTVPMQPILSNTTLTSTVPHITVPSTTTLPITIPQPMLTTPSIHLSTPSYPPTNPTTNTAPPPSFPTLPTDTFSNSSSSSTSSDETLEGRRKRKRKWKDFFERLMKEVIQKQEDLQKKFLEAIEKREHERIAREEAWRVQEMQRINREREILAQERSIAAAKDAAVMSFLQKVAEQQNLGQALNSINLVQQPSQQQPQPPLQQLPPSSVAPSPVQQPLPAVVSQPLVFPVVSQVTNMEIVKVDNNNNNSSENFTPSSSSRWPKVEVQALIKLRTNLDPKYQENGPKGPLWEEISSSMRKLGYNRNAKRCKEKWENINKYFKKVKESNKRRPEDSKTCPYFHQLDALYRQKSKAEGVAAAVKPESTVAPLMVRPEQQWPPQEETMRDRDIRMEDVENEEDEYEEEREGEGEGEEEEDDEEDEEGGGGGKYEIVANKTSGGSVAASTE* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2154 652 MobiDBLite consensus disorder prediction 404 419 - -
Vra8g2154 652 MobiDBLite consensus disorder prediction 1 67 - -
Vra8g2154 652 MobiDBLite consensus disorder prediction 599 630 - -
Vra8g2154 652 MobiDBLite consensus disorder prediction 50 65 - -
Vra8g2154 652 MobiDBLite consensus disorder prediction 275 290 - -
Vra8g2154 652 MobiDBLite consensus disorder prediction 397 422 - -
Vra8g2154 652 MobiDBLite consensus disorder prediction 246 299 - -
Vra8g2154 652 MobiDBLite consensus disorder prediction 154 174 - -
Vra8g2154 652 CDD GT1 66 131 - -
Vra8g2154 652 SMART sant 64 126 IPR001005 -
Vra8g2154 652 SMART sant 463 525 IPR001005 -
Vra8g2154 652 ProSiteProfiles Myb-like domain profile. 66 124 IPR001005 -
Vra8g2154 652 MobiDBLite consensus disorder prediction 577 652 - -
Vra8g2154 652 ProSiteProfiles Myb-like domain profile. 465 523 IPR001005 -
Vra8g2154 652 MobiDBLite consensus disorder prediction 260 274 - -
Vra8g2154 652 Pfam Myb/SANT-like DNA-binding domain 66 152 IPR044822 -
Vra8g2154 652 Pfam Myb/SANT-like DNA-binding domain 465 552 IPR044822 -
Vra8g2154 652 CDD GT1 465 530 - -
Vra8g2154 652 Gene3D - 467 528 - -
Vra8g2154 652 Gene3D - 68 129 - -
Vra8g2154 652 PANTHER - 1 641 - -
Vra8g2154 652 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 641 - -
Vra8g2154 652 Coils Coil 590 617 - -
Vra8g2154 652 Coils Coil 304 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2154 Vra-Chr8 39825449 39828864 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2154 57 583 Trihelix Transcription Factor Family AT1G76880 53.791 3.77e-163 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vra8g2154 Myb_DNA-bind_4 3.8e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2154 - - pvu:PHAVU_007G079700g 930.628