Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2153 ATGCAGCTTGGAGAAAACACAACCATGGAAACCTCCTCTGGTGAGGCTGTGGCGGCGCATGACGGTGGCGAGGTGATTATGATGGATGCAACTTCCGGTGAAGAGAAGGGAAAAGAGGGTGGCTTAGAAGAAGAAGAAGAAGGTGACAAGATCAACAGCTCATATGCTGGAAACAGATGGCCCCGCCAAGAAACTTTGGCTCTCTTGAAGATAAGGTCGGATATGGATGCTGTATTTCGTGATTCAAGTCTTAAGGGTCCACTTTGGGAAGAAGTTGCAAGGAAACTAGCAGAACTGGGTTACCACAGAAGCGCGAAGAAATGTAAGGAGAAATTCGAGAATGTGTACAAGTACCACAAAAGAACGAAAGAGAGTAGAAGCGGGAAACAGGAGGGAAAAACCTACAAGTTTTTTGATCAATTACAAGCACTTGAGAACCAATTCATAGTCTCTTACCCGTTAAAACCACAACCCACTTTGACAACAACAAACACGGTTGCATTATTACCTCCGCCAACAAGGCCTAGTGATACAACAACAATCTCTTATGTCACCACCACTGTTCCCTCCACAAACCCTACACCAATATCTCCCACACCACCTCCACCACCACCACCACCTACCAATGCCACCACCACTTCTCCAACAGTACAAACCAACCCTAGAAACCCTCCGCAACCCAACAACAATAACCACGACATCCCTTACTCTTTGCCTAACATGAACAACCTCTTCTCCACCACTTCAACCTCTTCTTCCACCGCCTCTGATGAAGACTTGGAAGAGAAGTACCGGAAGAAGAGAAAGTGGAAGGACTACTTCAGGAGGCTCACAAGGCAAGTCCTGGCCAAGCAAGAGGAAATGCAAAAGAGGTTCCTGGAAGCCATAGACAAAAGGGAGAGAGAACACGTCGCACAGCAAGAGGCTTGGAGGATCCAAGAAATGGCAAGGATCAATAGAGAACACGAACTTCTTGTCCAAGAAAGATCAACCGCAGCAGCCAAAAATGCAGCAGTTATTGCTTTTTTGCAACAGTTATCCGGTCAGAACCAGAACCAGAACCCCTCAACACAAACCGGTGCCAATTTCCTCCAAACACCGCCGTCACAACCACCACCTCCACCCCAAGTATCACAAGTGAAACCACCACCGCAACCACAAATACCATTGGTGATGTCAAATAATAACAATATTGAAATTCAGAAAATGAATAATGGTCACAGTGCAGTTGCGGCTACTCCTACAACTGCTGCTACTGCTATTTGCGTTGTTGCTACCACTCCTACTTCGTTGAATTCTTTATCTTCTTCTAGGTGGCCGAAAGCTGAAGTTCATGCTTTGATAAGGCTGAGGACGAGTCTTGAAACCAAATACCAAGAAAATGGACCAAAGGCTCCACTATGGGAGGACATATCAGCAGGAATGTTGAGGCTCGGGTACAACAGGAGTGCGAAGAGATGCAAAGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAGGAAAGCAACAAACACAGGCGAGAGAATAGTAAGACATGTCCCTATTTTCACGAACTGGACGCCTTATACAAAGAAAAGAGCAAAAGTCAGAACCCATTTGGCGTTTCATTCCTGAATATGAAGCCACATGAGATGATGGAGCCCTTGATGGTGCAACCGGAGCAGCAGTGGAGACCTCCCTCGCAATACGAGCAAGGTGGAGTGAAGGAGAACAGTGAAAGTGAATACGAAAGAAAAGAGAGAGAGGAGGAAGAAGAAGAAGATGATGATGATGAAGAAGTAGAAGAGAATGAGAATGAAGAGGGAGATCTAGAGAGTGTGGAAGATGAAGGAGGGAGCCGTTATGAGATTGCGACAAATAAACTTTCTTCAGTGGACACAGTTGAATGA 1896 0.4578 MQLGENTTMETSSGEAVAAHDGGEVIMMDATSGEEKGKEGGLEEEEEGDKINSSYAGNRWPRQETLALLKIRSDMDAVFRDSSLKGPLWEEVARKLAELGYHRSAKKCKEKFENVYKYHKRTKESRSGKQEGKTYKFFDQLQALENQFIVSYPLKPQPTLTTTNTVALLPPPTRPSDTTTISYVTTTVPSTNPTPISPTPPPPPPPPTNATTTSPTVQTNPRNPPQPNNNNHDIPYSLPNMNNLFSTTSTSSSTASDEDLEEKYRKKRKWKDYFRRLTRQVLAKQEEMQKRFLEAIDKREREHVAQQEAWRIQEMARINREHELLVQERSTAAAKNAAVIAFLQQLSGQNQNQNPSTQTGANFLQTPPSQPPPPPQVSQVKPPPQPQIPLVMSNNNNIEIQKMNNGHSAVAATPTTAATAICVVATTPTSLNSLSSSRWPKAEVHALIRLRTSLETKYQENGPKAPLWEDISAGMLRLGYNRSAKRCKEKWENINKYFKKVKESNKHRRENSKTCPYFHELDALYKEKSKSQNPFGVSFLNMKPHEMMEPLMVQPEQQWRPPSQYEQGGVKENSESEYERKEREEEEEEDDDDEEVEENENEEGDLESVEDEGGSRYEIATNKLSSVDTVE* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2153 631 SMART sant 56 118 IPR001005 -
Vra8g2153 631 SMART sant 435 497 IPR001005 -
Vra8g2153 631 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 7 620 - -
Vra8g2153 631 ProSiteProfiles Myb-like domain profile. 431 495 IPR001005 -
Vra8g2153 631 MobiDBLite consensus disorder prediction 1 57 - -
Vra8g2153 631 MobiDBLite consensus disorder prediction 349 365 - -
Vra8g2153 631 Gene3D - 60 121 - -
Vra8g2153 631 Gene3D - 439 500 - -
Vra8g2153 631 Coils Coil 571 612 - -
Vra8g2153 631 MobiDBLite consensus disorder prediction 193 211 - -
Vra8g2153 631 MobiDBLite consensus disorder prediction 31 52 - -
Vra8g2153 631 MobiDBLite consensus disorder prediction 556 631 - -
Vra8g2153 631 MobiDBLite consensus disorder prediction 557 571 - -
Vra8g2153 631 MobiDBLite consensus disorder prediction 185 264 - -
Vra8g2153 631 CDD GT1 58 123 - -
Vra8g2153 631 MobiDBLite consensus disorder prediction 366 388 - -
Vra8g2153 631 MobiDBLite consensus disorder prediction 581 609 - -
Vra8g2153 631 CDD GT1 437 502 - -
Vra8g2153 631 PANTHER - 7 620 - -
Vra8g2153 631 Pfam Myb/SANT-like DNA-binding domain 437 524 IPR044822 -
Vra8g2153 631 Pfam Myb/SANT-like DNA-binding domain 58 144 IPR044822 -
Vra8g2153 631 ProSiteProfiles Myb-like domain profile. 52 116 IPR001005 -
Vra8g2153 631 MobiDBLite consensus disorder prediction 212 255 - -
Vra8g2153 631 MobiDBLite consensus disorder prediction 349 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2153 Vra-Chr8 39809168 39812771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2153 52 559 Trihelix Transcription Factor Family AT1G76880 46.355 2.60e-135 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vra8g2153 Myb_DNA-bind_4 7.5e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2153 - - gmx:100799041 830.091