Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2152 ATGTCCTTCCGCAGCATAGTTCGTGACGTAAGGGATGGATTGGGAAGCCTATCTAGGAGGAGCTTTGAGGTAAGGCTTCCTGGCCATAACAGGGGCAAGTCACGCAGTTCGGTCCACGAGTTGCAGGAGCAGCCAGCGGTTATACAGAACAGCCGGTGGGCTAGCCTTCCCCCTGAGCTCCTTCGCGATGTTATTAATAGATTGGAAGCAAGCGAGAGTACATGGCCTGCTCGTAAGCATGTCGTTGCATGTGCTGCCGTGTGCAAGTCCTGGAGAGAAACGTGCAAAGAAATTGTCAGCAGTCCTGAATTCTGTGGGAAGATCACTTTCCCTGTTGCCCTGAAGCAGCCTGGGCATAGGAATGGAACCATCCAGTGTTTCATCAAGAGAGACAAATCTAAGCTGACATACCATCTCTTCCTTTGCCTCAGTCCTGCCTTGCTTGTTGAAAATGGAAAGTTTCTTCTCTCTGCAAAACGGACCAGAAGAACAACTTGCACGGAGTATATTATATCAATGGATGCAGATAACATATCGAGATCTAGTAGTACGTACATTGGAAAACTGAGGTCAAATTTTCTTGGCACCAAGTTCATAATCTATGATACACAACCACCGTACAACAATGCTATGCTGTCCCCACCTGGGCGTAGCCGTAGGTTTTCGAAAAAGGTTTCTCCAAAGGTCCCTAGCGGCAGCTACAACATTGCCCAGGTGACGTATGAGTTGAATGTTCTTGGTACTAGGGGTCCGCGAAGGATGAATTGCACGATGTACTCCATTCCTGCGTCATCCCTTGAGCCTAATGGCGTTGTCCCAGGCCAGCCAGAGCTCCTTTCTCGCCCCCTTGAGGATTCTTTTCGCAGTATATCCTTCTCAAAATCAATTGACAATTCAACCGAGTTTAGCAGCTCTAGGTTCTCAGACATTATGGGAACCGGTAATGAAGACCAGGAGGGAAAAGTGAGACCTTTAGTTCTCAAGAACAAGTCCCCAAGGTGGCATGAACAGCTGCAGTGTTGGTGTCTCAACTTCAGAGGAAGGGTCACCGTTGCCTCTGTTAAGAATTTTCAGCTGATTGCTGCCGCACCGCCAACCGCCGCCACCGCTGCGCCTGTAGGATCAGGACCTTCTCTATCCCAGCCAACACAGTCTTCTTCTGACCATGACAAGATTATTCTTCAGTTTGGCAAGGTTGGCAAGGATATGTTTACAATGGACTACCGGTACCCCCTCTCTGCATTTCAGGCTTTTGCCATATGCTTGACTAGCTTTGACACAAAATTGGCTTGTGAATAG 1299 0.485 MSFRSIVRDVRDGLGSLSRRSFEVRLPGHNRGKSRSSVHELQEQPAVIQNSRWASLPPELLRDVINRLEASESTWPARKHVVACAAVCKSWRETCKEIVSSPEFCGKITFPVALKQPGHRNGTIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAMLSPPGRSRRFSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMNCTMYSIPASSLEPNGVVPGQPELLSRPLEDSFRSISFSKSIDNSTEFSSSRFSDIMGTGNEDQEGKVRPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAAAPPTAATAAPVGSGPSLSQPTQSSSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2152 432 Pfam Tub family 114 427 IPR000007 -
Vra8g2152 432 Gene3D - 48 102 - -
Vra8g2152 432 ProSitePatterns Tub family signature 2. 417 432 IPR018066 -
Vra8g2152 432 SUPERFAMILY F-box domain 43 96 IPR036047 GO:0005515
Vra8g2152 432 Pfam F-box domain 53 100 IPR001810 GO:0005515
Vra8g2152 432 Gene3D Tubby Protein; Chain A 112 426 IPR025659 -
Vra8g2152 432 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 432 - -
Vra8g2152 432 SUPERFAMILY Tubby C-terminal domain-like 102 432 IPR025659 -
Vra8g2152 432 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Vra8g2152 432 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Vra8g2152 432 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Vra8g2152 432 PRINTS Tubby superfamily signature 327 344 IPR000007 -
Vra8g2152 432 PRINTS Tubby superfamily signature 345 361 IPR000007 -
Vra8g2152 432 PRINTS Tubby superfamily signature 389 408 IPR000007 -
Vra8g2152 432 PRINTS Tubby superfamily signature 410 432 IPR000007 -
Vra8g2152 432 ProSitePatterns Tub family signature 1. 345 358 IPR018066 -
Vra8g2152 432 PANTHER TUBBY-RELATED 1 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2152 Vra-Chr8 39786759 39790806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2152 1 432 TUB Transcription Factor Family AT1G76900 68.845 0.0 598
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vra8g2152 Tub 2.8e-115 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2152 K19600 - gmx:100810531 796.578