Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2136 ATGGCACTATTCTCTCCGTTGAAGTTATTGCCGGCGGTGCTGGCTCTGTTTCTGGCGTTGAGCCAGAAAAAGAGTCTCTGTTCGACGCTCGAGAGCGAAGGTTTGGCGCTGCTGGCGTTGAAGGAGAGTGTGGTGACAGACCCGCAGGGGGCTTTATCAAGCTGGAGTGGCGAAAATGGAGACGTTATGGATCCATGTTCGTGGTTCGGTGTGGAGTGCTCTTCTCACGGTAATGTCGTGACCTTGAATTTGAAAGACCTTTGTCTTGAAGGAACACTAGCACCAGAAGTTGGAATGCTGGCTCACATAAAATCAATCATTTTGCGCAACAATTCTTTCTTTGGAGAAATCCCTGAGGAGATCATATACTTACAGGAGTTGGAAGTCCTTGACTTGGGACATAACAACTTCAGTGGATCCCTTCCATTTGACCATGGCAATATGCCATCCCTGACCACTCTTCTATTGGACAACAATTCCCATATGACCAACTTAACTCCAGAGCTGTATAAGCTCAAGATGAATTCTGAATTTCGTGCTAATGAAGAACAACTAACTGGTGCCACCACTACTAGAGAAGCATATGTTGGCAGATGTAGTTTATGGCACATTGGCCAACATGGGGATAGAGCAGACCGGAAACTTCTCAAAGTAGCAAATGTTGCTAGTACACCCAAAATCCAAAGGCATGTTAACCAAGGGATACTTAAACAATTAGCATCGCATTTCCCTTTTGCATTACCACCAAATTTTGAGCCTTTCTCATCACCACCATCATTTTCACCGTCAGAAAGTCCCTCATATTCGCCATCACCTTCTCCCTCAGATAGTTTTTTCACTCCTTCGCCTGTAGTGTTACTAACTCCAGACGTATCACCACCAGTAAACACTCCTCTCACTGTGCCTACACCACCAGTTAATTGGGTTCCAGCACCTAGCCCTTCTCCATTTTCTACCCAAGGGAACACGTACAATTCCAATCAAATACAGCACTCGGCGATAATCTGGTCTGCTGTTGGGGGTTTCTCTTTACTGATTTTGATGTCAGCCATTACTTTTGCTTGCTTCCGAAGTAGGAAGGTTGTGACTGTTAAACCTTGGTCCACAGGATTGAGTGGCCAGCTGCAGAAAGCCTTTGTAAAAGGTGTGCCAAGTCTCAAACGAGGAGAAATTGAAGCAGCTTGTGAATATTTCAGTAACATTATCGGTTCGCTTCCTGATGGAACTGTGTATAAGGGGACTCTCTCCAGTGGAGTCGAGATAGCTGTAGCATCCTCTGCAGTGAACACAGCTCAAAAATGGTCAAAAAGCATGGAAGCTCAATTCCGAAATAAGATAGCAACATTATCTAGAGTGAATCACAAGAATTTTGTGAATCTAATTGGGTACTGTGAAGAGAATAAGCCGTTCTCAAGAATGATGGTGTTTGAGTACGCTCCAAATGGAACACTCTTTGAGCATATACACATTAGAGAAGCAGAAGAACTAAATTGGACTATGAGAATGAGGATAGCTATGGGAATAGCCTACTGCCTAGAGTATATGCATGACCTAAAACCCTCCATTGCCCATAGAAACCTGCAATCTTCATTTATATACCTTACTGAAGATTATGCTGCTAAAATATCAGACCTTAGCTTATGGAATGACATGTGTGCTGCAAAGAATGGGTCTGCAACCACAAAACTCTTGGAAACATCATCAGCAGATGCCAAGGACAATGTTTACAGCTTCGGAATAATATTGTTTGAGTTGATTACGGGGAAAATCCCCACGGCCGGGAACAACGAACTTCTTGCAGATTGGGCAGCAGAATATTTAAGGTGGGGGAAATCCTTGAGAGATGTTGTGGATCCAAGACTGAACTCTTTGCAGGAAGAAGAGATTGAAGAATGGTCTGAAGTGATGAGAAACTGTGTACAACCAGATCGAGAGAAAAGGCCAACTATGAAAGATGTTACATCTAGACTCAAGGAAATAACAGCTATGGGGCCTGATGGAGCAAATCCAAAGGCATCACCACTTTGGTGGGCAGAAATGGCAATTACGTCCACTGATTCAAGTTGA 2067 0.4383 MALFSPLKLLPAVLALFLALSQKKSLCSTLESEGLALLALKESVVTDPQGALSSWSGENGDVMDPCSWFGVECSSHGNVVTLNLKDLCLEGTLAPEVGMLAHIKSIILRNNSFFGEIPEEIIYLQELEVLDLGHNNFSGSLPFDHGNMPSLTTLLLDNNSHMTNLTPELYKLKMNSEFRANEEQLTGATTTREAYVGRCSLWHIGQHGDRADRKLLKVANVASTPKIQRHVNQGILKQLASHFPFALPPNFEPFSSPPSFSPSESPSYSPSPSPSDSFFTPSPVVLLTPDVSPPVNTPLTVPTPPVNWVPAPSPSPFSTQGNTYNSNQIQHSAIIWSAVGGFSLLILMSAITFACFRSRKVVTVKPWSTGLSGQLQKAFVKGVPSLKRGEIEAACEYFSNIIGSLPDGTVYKGTLSSGVEIAVASSAVNTAQKWSKSMEAQFRNKIATLSRVNHKNFVNLIGYCEENKPFSRMMVFEYAPNGTLFEHIHIREAEELNWTMRMRIAMGIAYCLEYMHDLKPSIAHRNLQSSFIYLTEDYAAKISDLSLWNDMCAAKNGSATTKLLETSSADAKDNVYSFGIILFELITGKIPTAGNNELLADWAAEYLRWGKSLRDVVDPRLNSLQEEEIEEWSEVMRNCVQPDREKRPTMKDVTSRLKEITAMGPDGANPKASPLWWAEMAITSTDSS* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2136 688 Gene3D Transferase(Phosphotransferase) domain 1 479 665 - -
Vra8g2136 688 SUPERFAMILY L domain-like 27 173 - -
Vra8g2136 688 Pfam Leucine rich repeat N-terminal domain 31 74 IPR013210 -
Vra8g2136 688 SUPERFAMILY Protein kinase-like (PK-like) 391 657 IPR011009 -
Vra8g2136 688 PANTHER PROTEIN MALE DISCOVERER 2 11 687 - -
Vra8g2136 688 Gene3D Phosphorylase Kinase; domain 1 364 478 - -
Vra8g2136 688 Pfam Protein tyrosine and serine/threonine kinase 401 657 IPR001245 GO:0004672|GO:0006468
Vra8g2136 688 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 11 687 - -
Vra8g2136 688 Pfam Leucine rich repeat 102 159 IPR001611 GO:0005515
Vra8g2136 688 ProSiteProfiles Protein kinase domain profile. 396 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2136 688 Gene3D Ribonuclease Inhibitor 29 216 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2136 Vra-Chr8 39627932 39633548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2136 376 660 Receptor kinase-like Gene Family AT4G31110 33.876 6.02e-41 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vra8g2136 PK_Tyr_Ser-Thr 6.6e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2136 - - gmx:100809790 1045.03