Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2133 ATGTCTACCTCTGCAACATCTCTTGCACTCTCAACTCTCACTCTCAGAACACAGCATCCTCTCTCTTCTCCCAAATGCTTCTCTTCTTCTCTCTCCCTCACCCCTAACGCCAAACCCATCTCCATTTCTACCGTTTTCCTCAAACCCACTTTCTCCCTCTCCTCTCGCTTCCTTCCCCGCGTCGCCCTCTCCTCCGACTACGACCAGCAAGAGGACACCTTTGCCGCCGCCCAGGGCTTCTCCCCCGACCTTAAGCTCTTTGTTGGCAACCTTCCGTTCAGTGTTGACAGTGCGCAGCTCGCAGAGCTCTTCGAAAGTGTTGGGATTGTGGAGGTGGTCGAGGTGATTTATGATAAGACGACTGGGAGAAGCAGGGGGTTTGGGTTTGTGACAATGTCTACGGTTGAGGAGGTTGAAGCGGCTGTTCAGCAGTTCAATGGATATGAACTGGATGGAAGGGCCCTTAGAGTGAATGCTGGGCCACCCCCTGCTCGGAATGAGAGTTCATCTCGTCTTAGAAGTTCTAACAGAGGTGGTGGTGGTGGAGGTGGTGGTGATTTTTCAGATAATAAAAACAAAGTCCATGTGGGTAATCTTGCTTGGGGTGTTGACCATGTAGCATTGGAGTCATTGTTTCGGGAACAGGGAAATGTCGTGGAAGCAAGGGTAGTCTATGACAGGGACAGTGGACGATCAAAAGGCTTTGGATTTGTGACTTACAGTAGTGCCGATGAAGTCAGCAGTGCAATTGAGTCCTTGGATGGTGTGGATTTGAATGGTAGAGCTATACGAGTCTCATTAGCAGACTCGAAGCCCAAGAGGTTTTGA 828 0.5036 MSTSATSLALSTLTLRTQHPLSSPKCFSSSLSLTPNAKPISISTVFLKPTFSLSSRFLPRVALSSDYDQQEDTFAAAQGFSPDLKLFVGNLPFSVDSAQLAELFESVGIVEVVEVIYDKTTGRSRGFGFVTMSTVEEVEAAVQQFNGYELDGRALRVNAGPPPARNESSSRLRSSNRGGGGGGGGDFSDNKNKVHVGNLAWGVDHVALESLFREQGNVVEARVVYDRDSGRSKGFGFVTYSSADEVSSAIESLDGVDLNGRAIRVSLADSKPKRF* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2133 275 MobiDBLite consensus disorder prediction 156 189 - -
Vra8g2133 275 PANTHER OS02G0815200 PROTEIN 1 275 - -
Vra8g2133 275 PANTHER 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 1 275 - -
Vra8g2133 275 Gene3D - 188 275 IPR012677 -
Vra8g2133 275 Gene3D - 63 187 IPR012677 -
Vra8g2133 275 SUPERFAMILY RNA-binding domain, RBD 79 185 IPR035979 GO:0003676
Vra8g2133 275 SUPERFAMILY RNA-binding domain, RBD 189 274 IPR035979 GO:0003676
Vra8g2133 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 264 IPR000504 GO:0003723
Vra8g2133 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 156 IPR000504 GO:0003723
Vra8g2133 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 270 IPR000504 GO:0003723
Vra8g2133 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 162 IPR000504 GO:0003723
Vra8g2133 275 SMART rrm1_1 193 266 IPR000504 GO:0003723
Vra8g2133 275 SMART rrm1_1 85 158 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2133 Vra-Chr8 39541302 39543710 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2133 86 274 Eukaryotic Initiation Factors Gene Family AT4G34110 32.812 2.91e-19 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2133 - - var:108324910 446.817
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2133 8 39541302 39543710 Vra8g2133 8 39541302 39543710 ECH
Vra3g0369 3 4396191 4402051 Vra8g2133 8 39541302 39543710 PCT