Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2132 ATGTCTACCTCTGCAACTTCTCTTGCACTCCCAACTCTCACTCTCAGAACACAGCATCCTCTCTCTTCTCCCAAATGCTTCTCTTCTTCTCTCTCCCTCACCCCTAACGCCAAACCCATCTCCATTTCTACCGTTTTCCTCAAACCCACTTTCTCCCTCTCCTCCCGCTTCCTTCCCCGCGTCGCCCTCTCCTCCGACTACGACCAGCAAGAGGACACCTTTGCCGCCGCCCAGGGCTTCTCCCCCGACCTTAAGCTCTTTGTTGGCAACCTTCCGTTCAGTGTTGACAGTGCGCAGCTCGCAGAGCTCTTCGAAAGTGTTGGGATTGTGGAGGTGGTCGAGGTGATTTATGATAAGACGACTGGGAGAAGCAGGGGGTTTGGGTTTGTGACAATGTCTTCGGTTGAGGAGGTTGAAGCGGCTGTTCAGCAGTTCAATGGATATGAACTGGATGGAAGGGCCCTTAGAGTGAATGCTGGGCCACCCCCTGCTCGGAATGAGAGTTCATCTCGTCTTAGAAGTTCTAACAGAAGTGGTGGTGGAGGTGGTGGAGGTGGTGGTGATTTTTCAGATAATAAAAACAAAGTCCACGTGGGTAATCTTGCTTGGGGTGTTGACCATGTAGCATTGGAGTCATTGTTTCGGGAACAAGGAAATGTCGTGGAAGCAAGGGTAGTCTATGACAGGGACAGTGGACGATCAAGAGGCTTTGGATTTGTGACTTACAGTAGTGCCGATGAAGTCAGCAGTGCAATTGAGTCCTTGGATGGTGTGGACTTGAATGGCAGAGCTATACGAGTCTCATTAGCAGACTCGAAGCCCAGGAGGTTTTGA 834 0.5108 MSTSATSLALPTLTLRTQHPLSSPKCFSSSLSLTPNAKPISISTVFLKPTFSLSSRFLPRVALSSDYDQQEDTFAAAQGFSPDLKLFVGNLPFSVDSAQLAELFESVGIVEVVEVIYDKTTGRSRGFGFVTMSSVEEVEAAVQQFNGYELDGRALRVNAGPPPARNESSSRLRSSNRSGGGGGGGGGDFSDNKNKVHVGNLAWGVDHVALESLFREQGNVVEARVVYDRDSGRSRGFGFVTYSSADEVSSAIESLDGVDLNGRAIRVSLADSKPRRF* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2132 277 MobiDBLite consensus disorder prediction 163 177 - -
Vra8g2132 277 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 194 272 IPR000504 GO:0003723
Vra8g2132 277 PANTHER 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 1 277 - -
Vra8g2132 277 SMART rrm1_1 85 158 IPR000504 GO:0003723
Vra8g2132 277 SMART rrm1_1 195 268 IPR000504 GO:0003723
Vra8g2132 277 SUPERFAMILY RNA-binding domain, RBD 191 276 IPR035979 GO:0003676
Vra8g2132 277 Gene3D - 189 277 IPR012677 -
Vra8g2132 277 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 84 162 IPR000504 GO:0003723
Vra8g2132 277 PANTHER OS02G0815200 PROTEIN 1 277 - -
Vra8g2132 277 Gene3D - 63 188 IPR012677 -
Vra8g2132 277 MobiDBLite consensus disorder prediction 156 191 - -
Vra8g2132 277 SUPERFAMILY RNA-binding domain, RBD 79 191 IPR035979 GO:0003676
Vra8g2132 277 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 266 IPR000504 GO:0003723
Vra8g2132 277 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 86 156 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2132 Vra-Chr8 39513485 39515908 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2132 86 276 Eukaryotic Initiation Factors Gene Family AT4G34110 31.959 8.12e-19 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2132 - - var:108324910 454.136