Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2125 ATGGTTCAAACAACCTACATTTTGCTCTTCTTCTCCGTTCTGCCCTCCTTTTTAACACATGGAACACCAGCATTCAACCTCACTCTCCCAGGGCAACATCCAGACCCAGAAGCTGTTGCCACACAAGTTCATAGGAGGGTGAATGCTTCAATGGGAAGAAGGGAAATGCTTAGATTGTCAGAGAAAGATGCGACATCATGTCTTACAGGTAACCCCATTGATGATTGTTGGAAGTGTGAGCCAGATTGGGCAAACAATAGACAGAGACTGGCTGATTGTGCAATTGGGTTTGGGCAGAACGCAAAGGGTGGAAAAGGTGGGGAATTTTACATAGTCACGGATTCATCTGATGAGGACCCTGTGAACCCAAAACCAGGAACACTTAGATATGCAGTGATACAGAATGAACCACTGTGGATCGTGTTCCCCAGTAACATGATGATTAAGCTCTCTCAGGAACTCATTTTCAATAGCTACAAAACCATAGATGGGCGTGGCGCTGACGTGCACATCGTTGGTGGAGGCTGCATCACTCTTCAGTATATTAGCAATGTCATTATTCACAACATTCACATCCACCATTGCCATCCCTCTGGTAATGCTAACGTGCGGTCGAGTCCAGAGCACTATGGGTATAGAACGGAATCAGACGGCGATGGAATCTCGATCTTCTCGTCGCGTGACATCTGGATCGATCACTGCACGCTATCGCGGTGCAAGGATGGCCTGATCGACGCGGTGATGGGTTCGACGGCAATAACGATCTCGAACAACCACTTCTCGCACCACAACGACGTGATGCTCTTAGGCCACAGCGACCACTACCTGCCAGACTCGGCGATGCAAGTGACAATCGCGTTCAACCACTTCGGAGAGAATCTGGTGCAGCGCATGCCGCGTTGCAGACTAGGTTACATTCACGTGGTGAACAACGACTTCACGCGATGGGAGATGTACGCGATCGGGGGAAGTGCGAGGCCTACGATTAACAGCCAGGGGAACCGCTACACTGCGCCGGAGGATCCGTACGCGAAGCAGATTACGAAGAGGCTGGACGCCGGAGAAGGGGAGTGGAGCGGCTGGAATTGGAGGTCGGAAGGGGATGTGATGCTGAATGGCGCGTTTTTCGTGGCCTCAGGAGGTGAGGCCGGCACTGACTACCAAAATGCGTACAGCGTTGAGCCTAAGAACGTGGATCGTATCTCGCTTCTCACCATGTCCGCTGGTGTTCTCGGCGTTGCCAGGGACAATAATCTGGGAATGTGGACGAGAGGACCCAATGATGGAGGTGTATATTTTTCAGATACAGGCCCAGAATACACGGATGACATGTCCCAGAGTACAATGCCACTGCCACCTTCACGTACTTTCTCTCTTCTCTCTGCATTTCTTGCTTTCTTGTGCCTCTCATTTCGTTCAATTACCTTAACAACACTTCTATAG 1443 0.5038 MVQTTYILLFFSVLPSFLTHGTPAFNLTLPGQHPDPEAVATQVHRRVNASMGRREMLRLSEKDATSCLTGNPIDDCWKCEPDWANNRQRLADCAIGFGQNAKGGKGGEFYIVTDSSDEDPVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNANVRSSPEHYGYRTESDGDGISIFSSRDIWIDHCTLSRCKDGLIDAVMGSTAITISNNHFSHHNDVMLLGHSDHYLPDSAMQVTIAFNHFGENLVQRMPRCRLGYIHVVNNDFTRWEMYAIGGSARPTINSQGNRYTAPEDPYAKQITKRLDAGEGEWSGWNWRSEGDVMLNGAFFVASGGEAGTDYQNAYSVEPKNVDRISLLTMSAGVLGVARDNNLGMWTRGPNDGGVYFSDTGPEYTDDMSQSTMPLPPSRTFSLLSAFLAFLCLSFRSITLTTLL* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2125 480 SUPERFAMILY Pectin lyase-like 63 393 IPR011050 -
Vra8g2125 480 PANTHER PECTATE LYASE 18-RELATED 5 435 IPR045032 GO:0030570
Vra8g2125 480 SMART amb_all 145 342 IPR002022 -
Vra8g2125 480 Gene3D - 70 412 IPR012334 -
Vra8g2125 480 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Vra8g2125 480 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Vra8g2125 480 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Vra8g2125 480 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Vra8g2125 480 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Vra8g2125 480 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Vra8g2125 480 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Vra8g2125 480 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Vra8g2125 480 PANTHER PECTATE LYASE 5 435 - -
Vra8g2125 480 Pfam Pectate lyase 154 334 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2125 Vra-Chr8 39168367 39173589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2125 1 480 Polysaccharide Lyase AT3G53190 67.762 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2125 K01728 - gmx:100815062 854.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2125 8 39168367 39173589 Vra8g2125 8 39168367 39173589 ECH
Vra3g0448 3 5177347 5180499 Vra8g2125 8 39168367 39173589 PCT