Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2121 ATGCACACACAACACAAACTACAACTGCTTTCCAAAGATCAGATGATCATCATCAAACCCAAACACAACAAGCGTCAAAGGGCACCCTCCCCTCCTACCTTTGCCAACCCTACTTCAACCTCCATTGATAGTGCCACAACCTCAACCACCACCACCACCACCCCATTTGAATCAATAGAAGAAGAACAAGACATGGTCAATTGTCTCATTCTCCTGGCTCAAGGCACACACCACGTGGCACCAGATCAAAACATCAATCACAAAAGGTCAACAAACCCTCGAGTCTTCCGGTGCAAGACTTGCAACAAATGCTTCCCTTCCTTCCAGTCACTTGGAGGGCACAGAACCAGCCACAGGAAGCCCAAGCACTACACCACTGATGTAGAAGCAGTTACTGCTACTTCTGTTAGAGACAATGATCTCATCACAACCACCACTCTCTCCTTGAAACCACCAACTAGGGTTAATAATTTTACCATCGCCACCAGAGTTCACCGCTGTTCGACCTGTTATGCTGAATTCTCATCTGGGCAAGCCTTGGGAGGCCACATGAGGCGCCACAGAAATGTTGTCAATGTTTCTTCAACAACGTCCATCAGTGCTGATGGTGGTGGTAGCCAAGAATACCATGGAGCTAAGAAACCATTGAATTTGGACTTGAATATTCCTGCCCCAGAGGAAGATCAAGGAGAGTCAACGTTTTCGTTTCTGCAACCAAAAAACCTTATCGTCTTCTCTTCTTCTTTGCTGAACTGCAATTACTGA 765 0.4641 MHTQHKLQLLSKDQMIIIKPKHNKRQRAPSPPTFANPTSTSIDSATTSTTTTTTPFESIEEEQDMVNCLILLAQGTHHVAPDQNINHKRSTNPRVFRCKTCNKCFPSFQSLGGHRTSHRKPKHYTTDVEAVTATSVRDNDLITTTTLSLKPPTRVNNFTIATRVHRCSTCYAEFSSGQALGGHMRRHRNVVNVSSTTSISADGGGSQEYHGAKKPLNLDLNIPAPEEDQGESTFSFLQPKNLIVFSSSLLNCNY* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2121 254 PANTHER ZINC FINGER PROTEIN ZAT5 10 254 - -
Vra8g2121 254 ProSitePatterns Zinc finger C2H2 type domain signature. 167 187 IPR013087 -
Vra8g2121 254 Pfam C2H2-type zinc finger 164 188 - -
Vra8g2121 254 Pfam C2H2-type zinc finger 95 121 - -
Vra8g2121 254 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Vra8g2121 254 Gene3D Classic Zinc Finger 73 190 - -
Vra8g2121 254 SUPERFAMILY beta-beta-alpha zinc fingers 162 189 IPR036236 -
Vra8g2121 254 MobiDBLite consensus disorder prediction 29 54 - -
Vra8g2121 254 PANTHER GATA ZINC FINGER DOMAIN-CONTAINING PROTEIN 15-LIKE 10 254 - -
Vra8g2121 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Vra8g2121 254 ProSiteProfiles Zinc finger C2H2 type domain profile. 165 187 IPR013087 -
Vra8g2121 254 SUPERFAMILY beta-beta-alpha zinc fingers 91 125 IPR036236 -
Vra8g2121 254 SMART c2h2final6 165 187 IPR013087 -
Vra8g2121 254 SMART c2h2final6 96 118 IPR013087 -
Vra8g2121 254 MobiDBLite consensus disorder prediction 21 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2121 Vra-Chr8 39033583 39034871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2121 10 254 C2H2 Transcription Factor Family AT2G28200 36.149 2.64e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra8g2121 zf-C2H2_6 6.4e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2121 - - var:108324571 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2121 8 39033583 39034871 Vra8g1884 8 36165974 36167589 ECH
Vra8g2121 8 39033583 39034871 Vra8g2121 8 39033583 39034871 ECH
Vra8g2121 8 39033583 39034871 Vra4g0368 4 6546003 6547306 ECH
Vra3g0454 3 5230958 5232575 Vra8g2121 8 39033583 39034871 PCT