Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2119 ATGTCTCACAGGAAGTTCGAACACCCAAGGCACGGGTCTCTGGGATTTCTCCCCAGGAAGCGTGCTGCTCGTCACAGGGGAAAAGTGAAGGCATTCCCTAAGGATGATCCATCCAAGTCACCCAAGTTGACTGCATTCTTGGGTTACAAGGCTGGTATGACTCACATTGTTAGAGAGGTCGAGAAGCCAGGATCAAAGCTTCACAAGAAGGAAACTTGTGAGCCTGTGACAATTATTGAGACTCCCCCCATGGTTGTTGTTGGTGTTGTCGGTTATGTGAAAACTCCCCGTGGTCTTCGTACCTTGAACACTGTGTGGGCTCAGCACCTGAGCGAAGAACTGAAGCGTAGGTTCTATAAGAACTGGTGCAAGTCCAAGAAGAAGGCTTTCACCAAGTACTCAAAGCAGTATGAAACTGACGAGGGGAAGAAGAACATTGAGACTCAGCTGGAGAAACTAAAGAAGTATGCTACCGTGATTCGTGTTTTGGCTCACACTCAGATCAGGAAAATGAAAGGGTTGAAGCAGAAGAAAGCCCATATCATGGAAATTCAGGTGAACGGTGGTTCTATTGCACAGAAAGTGGATTTTGCGTACAGTTTCTTTGAGAAACAGGTCCCTATTGATGCTGTGTTCCAGAAAGATGAGATGATTGACATCATTGGAGTTACAAAGGGTAAGGGTTATGAGGGTGTTGTAACTCGATGGGGTGTTACTCGTCTTCCCCGTAAGACTCACAGGGGTTTGAGGAAGGTAGCTTGTATTGGTGCCTGGCACCCTGCCAGAGTTTCATTCACTGTTGCCAGGGCTGGTCAGAATGGATACCACCACAGGACCGAGTTGAACAAAAAGGTTTACAAGCTCGGTAAAGCTGGGGATGAGTCTCACTCTGCTCTTACCGAGTTTGATAGGACTGAGAAAGACATTACCCCCATGGGAGGGTTCCCTCACTATGGTATTGTGAAGGACGATTTCATCATGGTGAAAGGATGCTGTGTTGGCCCCAAGAAAAGGGTTCTTACATTGCGCCAGTCCCTGCTTAAGCAGACTTCTCGTGTTGCCCTTGAGGAGATCAAACTCAAGTTTATCGATACCTCCTCAAAGTTTGGACACGGTCGCTTCCAGACCACACAGGAGAAGCAGAAGTTCTTTGGACGCCTCAAAGCATAA 1170 0.4752 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKSPKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEPVTIIETPPMVVVGVVGYVKTPRGLRTLNTVWAQHLSEELKRRFYKNWCKSKKKAFTKYSKQYETDEGKKNIETQLEKLKKYATVIRVLAHTQIRKMKGLKQKKAHIMEIQVNGGSIAQKVDFAYSFFEKQVPIDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKVYKLGKAGDESHSALTEFDRTEKDITPMGGFPHYGIVKDDFIMVKGCCVGPKKRVLTLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFFGRLKA* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2119 389 MobiDBLite consensus disorder prediction 1 37 - -
Vra8g2119 389 Gene3D - 83 207 - -
Vra8g2119 389 Pfam Ribosomal protein L3 1 370 IPR000597 GO:0003735|GO:0005840|GO:0006412
Vra8g2119 389 Gene3D Translation factors 44 385 - -
Vra8g2119 389 SUPERFAMILY Translation proteins 4 370 IPR009000 -
Vra8g2119 389 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 389 IPR045077 GO:0003735|GO:0005840|GO:0006412
Vra8g2119 389 PANTHER 60S RIBOSOMAL PROTEIN L3-LIKE 1 389 - -
Vra8g2119 389 Gene3D Ribosomal protein L3, domain 3 1 274 IPR044892 -
Vra8g2119 389 ProSitePatterns Ribosomal protein L3 signature. 212 235 IPR019926 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2119 Vra-Chr8 38985474 38988385 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2119 1 387 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 86.047 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2119 K02925 K10999 gmx:100806786 768.074