Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2117 ATGGTGGAAGAACGAATAATCAACTCCATCGGATCACACCTCTGTATAACGGTGGCGCACCAGAGACCTTCAGCTTCAGGTTCCGCTTCGGGCCAAGAAGACCCGGAAGACCCTTTCACCCCAAGGGATGTGCAAGTGCAAGGGGGTACTGTAGGTTCGGTTCCGACCCATGTGCTGTCACCCTCTTCCTCTGCCCAAACCAACACGGAGTGGGTCCCGGCAAGTGGTTTTCCCATGGCGCCACGTTTTATGCATGCGCCTTCTCCAGGTTTGTCTTCTTCTCCCGGGCCTCCTCTTTTGGGCTCGGGCTCGGTTGGGCAGAAAAGAGCGCGTGAAGATGACACTACTTCTGCGGCGAGTGGGGGTGAGGGTGGTTCGTCACAGACTGCGTCACAGGAAGAAAGCGGCGAGAGGAGGAGGAGATACAGAGGGGTGAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAGATTCGCGATCCTCACAAAGCGGCGAGAGTGTGGCTTGGCACCTTCGACACCGCCGAGGCTGCTGCCAGAGCCTACGATGAGGCCGCATTGAGGTTTAGAGGTAACAGAGCCAAACTCAACTTCCCCGAAAACGTTACTGCGGTTCGACCTCCTCACCTTCCCGATTTTCCGGCCACCTCACTCTCGGGCTCCGTTGATGTTCCAGCAGTAACTGGTTATTCTCCGACGGTGATGCAGGGGGCGCCGTTTCAGAGCTCCCCTGATTTGCTTAGAGACTATTGGGGTTATTCTCAGCTTCTGCGGAGCACAGGGGAGTTCCATGGACTCGAGCAGTGGTTCTATGATTCGCAAATGGCAGCGCTTCAATCTTCTTCATCGTCGTTGTTGCCGCCACCGCCTTCGTATGCACCATCCTCGGCTTCCTTTCCTCTGTTTTCAAGTCAGCAAATGGGAGTTTTCCGGCCGCCGGGGCAACAGCATCACGGCGGAGGAGACAGTGGTAGCGGGTCAGAGTTTCCACCTTCGTCATGGTCAGATACAAGTAGTTATCCTCCTCCACCTCCACCACCCGGTTGA 1044 0.568 MVEERIINSIGSHLCITVAHQRPSASGSASGQEDPEDPFTPRDVQVQGGTVGSVPTHVLSPSSSAQTNTEWVPASGFPMAPRFMHAPSPGLSSSPGPPLLGSGSVGQKRAREDDTTSAASGGEGGSSQTASQEESGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVTAVRPPHLPDFPATSLSGSVDVPAVTGYSPTVMQGAPFQSSPDLLRDYWGYSQLLRSTGEFHGLEQWFYDSQMAALQSSSSSLLPPPPSYAPSSASFPLFSSQQMGVFRPPGQQHHGGGDSGSGSEFPPSSWSDTSSYPPPPPPPG* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2117 347 MobiDBLite consensus disorder prediction 295 310 - -
Vra8g2117 347 MobiDBLite consensus disorder prediction 46 73 - -
Vra8g2117 347 MobiDBLite consensus disorder prediction 319 334 - -
Vra8g2117 347 ProSiteProfiles AP2/ERF domain profile. 141 198 IPR001471 GO:0003700|GO:0006355
Vra8g2117 347 PRINTS Ethylene responsive element binding protein signature 142 153 IPR001471 GO:0003700|GO:0006355
Vra8g2117 347 PRINTS Ethylene responsive element binding protein signature 164 180 IPR001471 GO:0003700|GO:0006355
Vra8g2117 347 CDD AP2 149 200 IPR001471 GO:0003700|GO:0006355
Vra8g2117 347 Gene3D AP2/ERF domain 140 200 IPR036955 GO:0003700|GO:0006355
Vra8g2117 347 SMART rav1_2 141 204 IPR001471 GO:0003700|GO:0006355
Vra8g2117 347 Pfam AP2 domain 141 190 IPR001471 GO:0003700|GO:0006355
Vra8g2117 347 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 62 337 - -
Vra8g2117 347 PANTHER DNA-BINDING DOMAIN 62 337 IPR044808 GO:0003700|GO:0009873
Vra8g2117 347 MobiDBLite consensus disorder prediction 21 148 - -
Vra8g2117 347 MobiDBLite consensus disorder prediction 295 347 - -
Vra8g2117 347 SUPERFAMILY DNA-binding domain 141 199 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2117 Vra-Chr8 38957603 38959290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2117 120 216 AP2-EREBP Transcription Factor Family AT2G33710 67.010 7.43e-36 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra8g2117 AP2 6.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2117 - - aprc:113873061 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1506 1 24115896 24118302 Vra8g2117 8 38957603 38959290 PCT