Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2113 ATGGATCCTTTTACTGAAGAGTTGCCTCAGTACATACATATAAATCAGAATGAGTTTTTCATGCGAAGGCACAAAAAGCAGAAGGAGGAGGATATTGCTATATGTGAATGCAAATATGATGCTGATGACACTGACAGTGCATGCGGGGATAGCTGCTTGAATGTTTTAACCAGCACAGAATGCACCCCTGGTTATTGCCCTTGTGATATCTTGTGCAAAAATCAGAAATTTCAGAAGTGTGAATATGCGAAAACAAAGTTGTTTAAAACTGAAGGCCGTGGATGGGGTCTTTTGGCTGATGAGGATCTTAAGGCAGGACAATTTGTCATTGAATACTGTGGAGAAGTTATATCATGGAAGGAAGCCAAACGTAGATCCCAGGCTTATGAAGATCAAGGCCTTAAAGATGCATTTATCATTTGCCTTAATGCATCTGAATCTATTGATGCAACCAGGAAAGGAAGCCTTGCTAGATTTATAAACCATTCCTGTCAACCGAATTGTGAGACGAGAAAATGGAATGTGTTGGGGGAAATAAGAGTTGGAATATTTGCAAAACATGATATTCCTATTGGAACTGAATTAGCTTATGATTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTCGTTGCCTATGTGGTGCTCTCAAATGTTCAGGGTTCCTTGGAGCAAAATCTCGTGGTTTTCAGGAGGATACTTATCTATGGGAAGATGATGATGATAGGTACTCTGTTGAGAAAATTCCTGTATATGATTCTGCAGAGGATGAACCAGTGTCAAATGTTAATGGACGAACTGAATCCTCTTTAGATGTGATGCTTAAAGCTGAGCAACTATCTGAGTCCACTGGTTTCAATGTTCAGTCCCTTGATTCAGTTCAGATGAAAGATTTAGATGTCAAAAAGATTAAGACTGAAGTAGCAGATGAGGATATGCACTTGTACACCCACGATACTGAACAGACGCTTTCACAAAAGAATGCAATGATATCACGAATCCGAGGTAATGCTGCAGGCAGAAACTATCACATTGGACCTAGGTCCATTTCTACCAAAAGATCAAGGACATATAATGGCGGGAGGTTTAAAAATCTCGTAGAGAAGAAAATTGATGCCAAGTTTGCTGCTGGCCTCCTAGCATCCAAGGAAGCACAAGAGGAGATTTTAAATTTTGAGAAAAGAAAGGATGATGCTACATCTACTCTTGATTCCTTATACGATGAAATACGGCCTGCTATTGAGGAACACGAGAGGGATAGCCAAGACAGTGTATCCACCACTGTCGCAGAGAAGTGGATACAGGCTTGCTGCCTAAAATTGAAGGCTGAGTTTGATCTCTACTCGTCAATTGTGAAAAATGTTGCTTGCACTGCGCAAAGGGCACCTGGACAAGCAAAACCTGCTGAAGTAGATAATGAAAACGAAATTAAGTTCTTGACAGGTTGA 1446 0.4032 MDPFTEELPQYIHINQNEFFMRRHKKQKEEDIAICECKYDADDTDSACGDSCLNVLTSTECTPGYCPCDILCKNQKFQKCEYAKTKLFKTEGRGWGLLADEDLKAGQFVIEYCGEVISWKEAKRRSQAYEDQGLKDAFIICLNASESIDATRKGSLARFINHSCQPNCETRKWNVLGEIRVGIFAKHDIPIGTELAYDYNFEWFGGAKVRCLCGALKCSGFLGAKSRGFQEDTYLWEDDDDRYSVEKIPVYDSAEDEPVSNVNGRTESSLDVMLKAEQLSESTGFNVQSLDSVQMKDLDVKKIKTEVADEDMHLYTHDTEQTLSQKNAMISRIRGNAAGRNYHIGPRSISTKRSRTYNGGRFKNLVEKKIDAKFAAGLLASKEAQEEILNFEKRKDDATSTLDSLYDEIRPAIEEHERDSQDSVSTTVAEKWIQACCLKLKAEFDLYSSIVKNVACTAQRAPGQAKPAEVDNENEIKFLTG* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2113 481 Pfam SET domain 94 200 IPR001214 GO:0005515
Vra8g2113 481 ProSiteProfiles Post-SET domain profile. 207 223 IPR003616 -
Vra8g2113 481 Gene3D SET domain 3 235 IPR046341 -
Vra8g2113 481 ProSiteProfiles SET domain profile. 83 200 IPR001214 GO:0005515
Vra8g2113 481 ProSiteProfiles AWS domain profile. 30 81 IPR006560 GO:0005634|GO:0018024
Vra8g2113 481 SUPERFAMILY SET domain 9 220 IPR046341 -
Vra8g2113 481 PANTHER SET DOMAIN PROTEINS 6 420 - -
Vra8g2113 481 SMART shorttest3 30 82 IPR006560 GO:0005634|GO:0018024
Vra8g2113 481 SMART set_7 83 206 IPR001214 GO:0005515
Vra8g2113 481 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 6 420 - -
Vra8g2113 481 Coils Coil 381 401 - -
Vra8g2113 481 Pfam AWS domain 42 80 IPR006560 GO:0005634|GO:0018024
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2113 Vra-Chr8 38925250 38933287 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2113 65 222 C2H2 Transcription Factor Family AT2G23740 33.708 1.91e-20 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vra8g2113 SET 7.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2113 - - gmx:100804657 892.878