Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2109 ATGGGCTGTGTTCAGGCCAAGCCATTGGATTCGGAAGGTCCAGACTACAGGGGCCTAGAGAGGTTGAAGTTGGATAATGGGTATGTTGCAAGTTCTGACTTTGTTGCTCATAGGAGATCCACTGGTCAAAGACATGACCCCAATAAGGATCACCATCACAGGCTGCATCAGCATCAGAGAGAACAGCCCATAAAGAATAAAGTTGAGTCCGGTGTTGCCAAGGATGGTGCTGGGCTTCATAAGGGCAAGGTGGTTGGAAGAGAGGGGAGGGGATTCACGCGTCGTGACGATAAGAAAGTGACAAACAAGTGTTGCTTTGAGGATGAGATGGTAGATGGGTGGCCAAGGTGGTTGGTTGATAATGTCCCTGCACAAGTGTTGGCTGGCTTGGTTCCCAGGAGTGCTGAATCCTACAAAATGATTGATAAGGTTGGACAAGGAACCTACAGCAATGTTTATAAAGCTCTAGATAGAGACACAGGAGAAATTGTGGCCCTGAAGAAGGTTCGCTTCAATACATCAGAGCCCGAAAGCATAAAGTTTATGGCAAGAGAAATTACCATATTACAAAGACTGGATCATCCCAATGTAGTCAAACTTAAAGGATTAGCCACTTCAAGAATGCAGTACAGTATATATCTAGTTTTTGACTTCATGCAAACAGATTTGGCACGAGTTATTGCTCGTCCTGAAGAGAAACTATCAGAACCACAGGTCAAGTGCTATATGCATCAATTACTTTCAGGTCTGCAGCATTGCCATGATAGGGGAATTCTTCACCGAGATATAAAGGGGTCGAACCTTTTGATTGATAAAAATGGGATGCTTCAGATTGCAGATTTTGGACTTGCTAATTTTTATGGTCCAGATTATCATCAACCTCTCACTAGCCGGGTTGTGACGCTATGGTACAGAGCTCCTGAATTATTGTTGGGTGACACAGACTATGGAGTTGGTGTTGATCTGTGGAGTGCTGGATGTCTCCTGGCAGAAATGTTCAAAGGATTCCCAATCATGCCTGGCAGAAATGAGGTTGAACAAATTCATAAAATTTTCAGGCTATGTGGCACACCATCAGAGGAGTATTGGAGAAAATTGAAACTTTCTATTACTTTTAGACCTCCAAAGTCTTATAGACCCAGCCTTATAGAAACTTTCGGGGATCTCCCTCCTTCTTCTTTAGGTCTTGTATGCACCCTGCTTGCTCTGGATCCTGCATTCCGTGGAAGTGCATCCAAAGCTCTTAAAAACCAGTTTTTCTTTACAAGCCCATTGGCTTGTGACCTCTCTGGTCTGCCTGTTCTCTTCAAAGAGGATGATGAGCATGTTCAAGCCAACGAACAGATCAAGTACATGAACTCTAAAATCAGACGTTCTCGTACATATCTGGAGCGTCGTAAGAATTCAGCATCTAAGAGGCCAATAGAGCATACTGTATCTTCTAAAGAGGAATTGATAAGGAATGCTAAACCTGAAACTTATGCTCCAACTGTAGACATGGGTAGCACAAGTAGTACCTCGTCTAGTGTAAACCCAGGAGGAGCTAAGGACCAATCACCATTTTTTCTATCTCCATTTGGGGAATTAGATCAAAAGCTATCTCCAAAAACCCACCACCACCATGTTAATGTTGGTGAAGAAAACATCATAATTCTTCCTCCATTACCCAAGTCTAAACCAAATGCTACAAAGAAAGATGACAGTAGATACAGACCAGACCAGTTTTTCAGGTCAGCTTCCACCAGAGAATTTAGATACTTGAAAAGGGAAGAACGTTTACTATTGGATTTTGATAATTAG 1800 0.4278 MGCVQAKPLDSEGPDYRGLERLKLDNGYVASSDFVAHRRSTGQRHDPNKDHHHRLHQHQREQPIKNKVESGVAKDGAGLHKGKVVGREGRGFTRRDDKKVTNKCCFEDEMVDGWPRWLVDNVPAQVLAGLVPRSAESYKMIDKVGQGTYSNVYKALDRDTGEIVALKKVRFNTSEPESIKFMAREITILQRLDHPNVVKLKGLATSRMQYSIYLVFDFMQTDLARVIARPEEKLSEPQVKCYMHQLLSGLQHCHDRGILHRDIKGSNLLIDKNGMLQIADFGLANFYGPDYHQPLTSRVVTLWYRAPELLLGDTDYGVGVDLWSAGCLLAEMFKGFPIMPGRNEVEQIHKIFRLCGTPSEEYWRKLKLSITFRPPKSYRPSLIETFGDLPPSSLGLVCTLLALDPAFRGSASKALKNQFFFTSPLACDLSGLPVLFKEDDEHVQANEQIKYMNSKIRRSRTYLERRKNSASKRPIEHTVSSKEELIRNAKPETYAPTVDMGSTSSTSSSVNPGGAKDQSPFFLSPFGELDQKLSPKTHHHHVNVGEENIIILPPLPKSKPNATKKDDSRYRPDQFFRSASTREFRYLKREERLLLDFDN* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2109 599 MobiDBLite consensus disorder prediction 38 80 - -
Vra8g2109 599 MobiDBLite consensus disorder prediction 61 80 - -
Vra8g2109 599 ProSiteProfiles Protein kinase domain profile. 138 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2109 599 MobiDBLite consensus disorder prediction 464 489 - -
Vra8g2109 599 PANTHER CELL DIVISION PROTEIN KINASE 1 534 - -
Vra8g2109 599 SMART serkin_6 138 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2109 599 Pfam Protein kinase domain 138 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2109 599 Gene3D Transferase(Phosphotransferase) domain 1 221 454 - -
Vra8g2109 599 PANTHER CYCLIN-DEPENDENT KINASE 1 534 - -
Vra8g2109 599 MobiDBLite consensus disorder prediction 464 517 - -
Vra8g2109 599 SUPERFAMILY Protein kinase-like (PK-like) 133 424 IPR011009 -
Vra8g2109 599 MobiDBLite consensus disorder prediction 497 515 - -
Vra8g2109 599 MobiDBLite consensus disorder prediction 552 571 - -
Vra8g2109 599 Gene3D Phosphorylase Kinase; domain 1 128 220 - -
Vra8g2109 599 ProSitePatterns Protein kinases ATP-binding region signature. 144 167 IPR017441 GO:0005524
Vra8g2109 599 CDD STKc_CDK9_like 138 420 - -
Vra8g2109 599 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2109 Vra-Chr8 38897679 38902193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2109 133 481 Core Cell Cycle Gene Families AT5G10270 41.417 9.94e-90 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vra8g2109 Pkinase 1.4e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2109 K08819 - gmx:100776854 1039.25