Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2101 ATGAGCTCGAAAGTTCCCTCCCCAGATTCAATTGATGCATTGAAGTCTAAAATGTCTGTTCAAAAGGACACAGATAAGTTCTTCATGTCAATCACTGAAGGAGAGAAAAAGCCATTTGACTTTTTACGTGTTCTATATGATGGTTGCATTGCTGGAGGTGTTGCGGGTGTCATGGTAGAGACAGCATTATACCCCATTGACACAATCAAAACTCGACTACAGGTTGCTCGTGATGGAGGAAAGATTGTTCTGAAGGGTCTGTACTCTGGATTGTCTGGAAATCTTGTTGGTGTCTTGCCAGNGTNTGCAATTTTTATTGGAGTGTATGAACCCACAAAGCAGCAATTGCTACAGTCATTGCCTGAGAATCTCAGTGNTGTGGCTCATTTTGCTGCAGGTGCTATTGGAGGCATTGCTTCTTCTNTTGTTCGGGTTCCAACTGAGGTTGTTAAGCAAAGGATGCAAATTGGGCAATTTAGATCAGCTCCAGATGNTGTTCGTCTCATTGTCTCAAATGAAGGTTTTAAAGGTCTTTATGCGGGATATGGTTCTTTCTTATTGCGAGATTTACCTTTTGATGCCATAGAATTATGCATTTATGAGCAGCTCCGTATTGGGTATAAATTAGCGGCAAAAAGAGATCCTAATGATCCAGAGAATGCTATGCTTGGGGCAGTGGCTGGTGCCATAACTGGAGCAGTCACAACTCCTCTTGATGTAGTAAAGACCAGATTGATGGTTCAGGGATCACAAAATCATTACAAAGGCATCAGTGATTGTGTGAGGACAATAGTTAAAGAAGAAGGAACTCATGCTCTTTTTAAGGGTATTGGGCCTAGAGTTTTGTGGATAGGAGTTGGCGGTTCAATATTTTTTTGTGCTCTTGAGAAGACAAAGCAAATACTTGCTCGGAATCGGCAAACCAAAGCTGAGATTCAGAAATGA 945 0.4148 MSSKVPSPDSIDALKSKMSVQKDTDKFFMSITEGEKKPFDFLRVLYDGCIAGGVAGVMVETALYPIDTIKTRLQVARDGGKIVLKGLYSGLSGNLVGVLPXXAIFIGVYEPTKQQLLQSLPENLSXVAHFAAGAIGGIASSXVRVPTEVVKQRMQIGQFRSAPDXVRLIVSNEGFKGLYAGYGSFLLRDLPFDAIELCIYEQLRIGYKLAAKRDPNDPENAMLGAVAGAITGAVTTPLDVVKTRLMVQGSQNHYKGISDCVRTIVKEEGTHALFKGIGPRVLWIGVGGSIFFCALEKTKQILARNRQTKAEIQK* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2101 314 PRINTS Mitochondrial carrier protein signature 129 142 IPR002067 GO:0055085
Vra8g2101 314 PRINTS Mitochondrial carrier protein signature 142 156 IPR002067 GO:0055085
Vra8g2101 314 PRINTS Mitochondrial carrier protein signature 181 201 IPR002067 GO:0055085
Vra8g2101 314 PRINTS Mitochondrial carrier protein signature 230 248 IPR002067 GO:0055085
Vra8g2101 314 PRINTS Mitochondrial carrier protein signature 274 292 IPR002067 GO:0055085
Vra8g2101 314 PANTHER S-ADENOSYLMETHIONINE CARRIER 1, CHLOROPLASTIC/MITOCHONDRIAL 9 310 - -
Vra8g2101 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 219 301 IPR018108 -
Vra8g2101 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 42 115 IPR018108 -
Vra8g2101 314 ProSiteProfiles Solute carrier (Solcar) repeat profile. 124 206 IPR018108 -
Vra8g2101 314 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 9 310 - -
Vra8g2101 314 Pfam Mitochondrial carrier protein 48 117 IPR018108 -
Vra8g2101 314 Pfam Mitochondrial carrier protein 124 204 IPR018108 -
Vra8g2101 314 Pfam Mitochondrial carrier protein 219 305 IPR018108 -
Vra8g2101 314 Gene3D Mitochondrial carrier domain 48 314 IPR023395 -
Vra8g2101 314 SUPERFAMILY Mitochondrial carrier 49 296 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2101 Vra-Chr8 38820770 38826970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2101 50 302 Chloroplast and Mitochondria Gene Families AT2G30160 32.384 8.05e-34 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2101 K15111 - gmx:100800051 521.931