Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2095 ATGCTTCAACTTCTCAATCTCTCTTCCACCAATGTCTCTGGAACCATTCCACCCTCTTTTGGTCAACTTTTCCATCTTCAGCTGCTTGACCTCTCCTCAAACTCTCTCACCGGTTCCATACCTGCTGAACTGGGAAGCCTCTCTTTACTTCAATTCCTTTTCTTGAACTCCAACAGATTGACAGGAAGCATTCCTCAACATCTTTCTAATCTCACTTCACTTGAAGTTCTCTGCCTCCAAGACAATCTTCTCAACGGCTCAATCCCATCACAGCTAGGCTCTTTGACATCTCTGCAGCAGTTTCGGATAGGGGGAAATCCATATCTCACTGGACAAATCCCTTCACAGTTAGGCCTACTCACCAACCTCACCACTTTTGGCGCAGCTGCCACGGGACTTTCTGGTGCCATTCCCTCTACATTTGGTAACTTGATCAATCTACAGACTCTAGCACTTTATGATACTGAAATTTCTGGCTCAATGCCACCAGAACTTGGGTTGTGTTCTGAGCTGAGAAATCTGTATCTGCACATGAATAAGCTCACTGGTTCTATCCCTCCGCAATTGAGCAAGTTGCAAAAACTTACTAGCTTGCTTCTTTGGGGCAATGCCTTAACTGGTTCAATCCCAGCAGAGCTTTCCAACTGTTCATCACTTGTTATATTTGATGTCTCTTCTAATGACCTCTCTGGTGAAATACCGGGGGACTTTGGGAAGCTGGTGGTTCTGGAACAGCTTCATCTATCTGATAATTCACTCACAGGTAAAATACCATGGCAGTTGAGCAACTGTACCAGCCTTTCTACTGTTCAGCTCGACAAGAATCAGTTATCAGGTACTATTCCCTGGGAGTTAGGTAAATTAAAGGTTCTACAGAGCTTTTTCTTATGGGGTAATCTAGTGTCTGGAACCATACCATCATCCTTTGGAAACTGCACAGAACTCTACGCACTTGACCTTTCAAGGAATAAGCTATCAGGTTCTATACCAGAAGAGATTTTCGGCTTGAAGAAGCTGAGTAAGCTTCTGCTTCTGGGCAATTCATTAACAGGAGGATTGCCACCAAGTGTTGCAAATTGCCAGTCTTTGGTGAGGTTGAGGGTTGGAGAGAACCAGCTTTCAGGCCAGATTCCTAAAGAGATAGGTCAATTGCAGAATCTGGTGTTCCTCGACCTGTACATGAACCATTTCTCTGGAAGCATACCAGTGGAGATTGCTAACATCACAGTTCTTGAGCTGTTAGATGTTCACAACAACTACCTCACTGGGGAAATTCCATCTGTGATTGGGGAGCTTGAAAATTTGGAGCAGCTTGATCTCAGTAGAAACAGTTTGACAGGAGAAATTCCTTGGAGCTTCGGAAACTTCAGCTATTTGAACAAGCTCATCCTCAACAATAATGTACTGACAGGACCAATCCCAAAATCCATTAGAAATTTGCAGAAGTTAACTCTTCTGGATTTGAGTTACAATAGCCTCTCTGGTGGCATACCCCCAGAGATTGGTCATGTTACAAGCTTAACCATCAGCTTGGACTTGAGCTACAATTCATTTACAGGAGAAATCCCAGAGTCAGTGTCTGCTTTGACACAGTTACAATCACTTGATCTTTCTCATAACATGCTTTATGGAGAAATCAAGGTTCTGGGGTCTCTCACTAGCCTCACCTCTCTCAATATCTCCTACAACAATTTCTCAGGTCCTATCCCAGTAACTCCATTCTTCAGAACACTATCCTCCAATTCATATATTCAGAACCCTGGGCTTTGTCAGTCCATTGATGGGGCTACCTGTTCTTCTAGTCTGATTCGAAAAAATGGTTTGAAATCTGCAAAAACCATTGCTTTGATCACAGTCATTCTAGCCTCGGTTACTATAATTCTCATTGCTTCCTGGATTCTAGTAACTCGTAATCATGGATACAAGGTTGAAAAAACATTGGGGGCATCAACTTCCACATCAGGAACTGAAGATTTCTCTTATCCTTGGACTTTCATCCCATTTCAGAAAGTAAACTTCAGCATCGATAGTATCTTGGATTGCTTGAAGGATGAAAATGTTATTGGAAAGGGCTGCTCAGGTGTTGTGTACAAGGCTGAGATGCCAAATGGGGAGTTGATTGCGGTAAAGAAGCTTTGGAAAGCAAGCAAAGCAGATGAAATAGTGGATTCTTTTGCTGCAGAGATACAGATTCTTGGATACATTCGGCACAGGAACATAGTGCGGCTCATAGGTTATTGTTCTAACAGGAGCGTTAATCTTCTTCTCTATAACTACATCCCAAATGGTAATCTGCGACAGCTTTTACAAGGGAACAGGAACTTAGACTGGGAAACAAGATACAAGATTGCTGTCGGATCAGCTCAAGGTCTAGCTTACCTTCATCATGATTGCGTACCTGCAATTCTCCATAGAGATGTCAAGTGCAATAACATACTTCTGGACTCCAAATTTGAGGCATATCTGGCGGATTTTGGTCTTGCAAAGCTAATGCATTCGCCAAATTATCATCATGCAATGTCCAGAGTTGCTGGTTCCTATGGTTATATTGCCCCAGAATATGGCTACTCCATGAACATAACAGAGAAGAGTGATGTCTATAGTTATGGGGTGGTTTTGCTAGAGATTCTAAGTGGTCGCAGTGCTGTTGAATCCCATGTTGCAGATGGCCAACACATAGTGGAATGGGTGAAGAGGAAGATGGGAAGCTTTGAACCAGCTATATCAATACTAGACACAAAGCTGCAAGGTCTACCAGATCAAATGGTGCAAGAGATGCTTCAAACACTTGGAATTGCTATGTTTTGTGTGAACTCTTCCCCATCAGAGCGCCCCACAATGAAGGAAGTGGTTGCACTACTGATGGAGGTGAAGAGCCAGCCTGAGGAGATGGGCAAGACCTCTCAACCTCTAATAAAACAGTCCTTAAATCAAAACTGA 2940 0.431 MLQLLNLSSTNVSGTIPPSFGQLFHLQLLDLSSNSLTGSIPAELGSLSLLQFLFLNSNRLTGSIPQHLSNLTSLEVLCLQDNLLNGSIPSQLGSLTSLQQFRIGGNPYLTGQIPSQLGLLTNLTTFGAAATGLSGAIPSTFGNLINLQTLALYDTEISGSMPPELGLCSELRNLYLHMNKLTGSIPPQLSKLQKLTSLLLWGNALTGSIPAELSNCSSLVIFDVSSNDLSGEIPGDFGKLVVLEQLHLSDNSLTGKIPWQLSNCTSLSTVQLDKNQLSGTIPWELGKLKVLQSFFLWGNLVSGTIPSSFGNCTELYALDLSRNKLSGSIPEEIFGLKKLSKLLLLGNSLTGGLPPSVANCQSLVRLRVGENQLSGQIPKEIGQLQNLVFLDLYMNHFSGSIPVEIANITVLELLDVHNNYLTGEIPSVIGELENLEQLDLSRNSLTGEIPWSFGNFSYLNKLILNNNVLTGPIPKSIRNLQKLTLLDLSYNSLSGGIPPEIGHVTSLTISLDLSYNSFTGEIPESVSALTQLQSLDLSHNMLYGEIKVLGSLTSLTSLNISYNNFSGPIPVTPFFRTLSSNSYIQNPGLCQSIDGATCSSSLIRKNGLKSAKTIALITVILASVTIILIASWILVTRNHGYKVEKTLGASTSTSGTEDFSYPWTFIPFQKVNFSIDSILDCLKDENVIGKGCSGVVYKAEMPNGELIAVKKLWKASKADEIVDSFAAEIQILGYIRHRNIVRLIGYCSNRSVNLLLYNYIPNGNLRQLLQGNRNLDWETRYKIAVGSAQGLAYLHHDCVPAILHRDVKCNNILLDSKFEAYLADFGLAKLMHSPNYHHAMSRVAGSYGYIAPEYGYSMNITEKSDVYSYGVVLLEILSGRSAVESHVADGQHIVEWVKRKMGSFEPAISILDTKLQGLPDQMVQEMLQTLGIAMFCVNSSPSERPTMKEVVALLMEVKSQPEEMGKTSQPLIKQSLNQN* 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2095 979 SUPERFAMILY L domain-like 281 601 - -
Vra8g2095 979 Gene3D Ribonuclease Inhibitor 183 278 IPR032675 -
Vra8g2095 979 Gene3D Ribonuclease Inhibitor 112 182 IPR032675 -
Vra8g2095 979 Pfam Protein kinase domain 684 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2095 979 SMART serkin_6 682 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2095 979 Pfam Leucine rich repeat 291 349 IPR001611 GO:0005515
Vra8g2095 979 Pfam Leucine rich repeat 2 60 IPR001611 GO:0005515
Vra8g2095 979 PANTHER - 2 975 - -
Vra8g2095 979 SMART LRR_typ_2 432 455 IPR003591 -
Vra8g2095 979 SMART LRR_typ_2 312 336 IPR003591 -
Vra8g2095 979 SMART LRR_typ_2 23 47 IPR003591 -
Vra8g2095 979 SMART LRR_typ_2 192 216 IPR003591 -
Vra8g2095 979 SMART LRR_typ_2 71 95 IPR003591 -
Vra8g2095 979 SMART LRR_typ_2 480 504 IPR003591 -
Vra8g2095 979 SMART LRR_typ_2 529 556 IPR003591 -
Vra8g2095 979 SMART LRR_typ_2 240 264 IPR003591 -
Vra8g2095 979 Gene3D Phosphorylase Kinase; domain 1 656 759 - -
Vra8g2095 979 Gene3D Ribonuclease Inhibitor 279 376 IPR032675 -
Vra8g2095 979 Gene3D Ribonuclease Inhibitor 377 472 IPR032675 -
Vra8g2095 979 Gene3D Ribonuclease Inhibitor 2 111 IPR032675 -
Vra8g2095 979 Gene3D Ribonuclease Inhibitor 473 600 IPR032675 -
Vra8g2095 979 PRINTS Leucine-rich repeat signature 26 39 - -
Vra8g2095 979 PRINTS Leucine-rich repeat signature 529 542 - -
Vra8g2095 979 Gene3D Transferase(Phosphotransferase) domain 1 760 976 - -
Vra8g2095 979 ProSiteProfiles Leucine-rich repeat profile. 531 553 IPR001611 GO:0005515
Vra8g2095 979 SUPERFAMILY Protein kinase-like (PK-like) 663 954 IPR011009 -
Vra8g2095 979 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672|GO:0006468
Vra8g2095 979 ProSitePatterns Protein kinases ATP-binding region signature. 688 711 IPR017441 GO:0005524
Vra8g2095 979 Pfam Leucine Rich Repeat 434 456 IPR001611 GO:0005515
Vra8g2095 979 Pfam Leucine Rich Repeat 243 264 IPR001611 GO:0005515
Vra8g2095 979 Pfam Leucine Rich Repeat 482 503 IPR001611 GO:0005515
Vra8g2095 979 ProSiteProfiles Protein kinase domain profile. 682 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2095 979 PANTHER UNNAMED PRODUCT 2 975 - -
Vra8g2095 979 SUPERFAMILY RNI-like 5 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2095 Vra-Chr8 38755838 38759293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2095 2 973 Receptor kinase-like Gene Family AT5G56040 45.998 0.0 829
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra8g2095 Pkinase 3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2095 - - gmx:100819611 1800.41