Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2091 ATGGCAGCAGCGGTTTCTTCCCCAATGACTCAATCTGTGACTGCAACAGCGGCTCCCGTAACTGCATTGGGCGGAGGATCATTTTCCAATGCCTCGCTGTATGTGGGCGATCTCGATGGAAATGTAAACGAGGAGCAACTTTATGATCTTTTCAGTCAAGTTGCTCAGATTGTTTCGATTAGGGTTTGCAGAGATCAGAGCAAACGATCCTCTCTTGGTTACGCTTATGTCAATTTTTCTAATGCTCAGGATGCAACCAATGCCATGGAACTTTTGAACTTCACTCCTGTTAATGGAAAACCGATTCGAATTATGTTTTCTCAACGTGATCCAAGCATTCGGAAAAGTGGACAAGGCAATGTGTTCATCAAGAACCTTGATACATCAATTGATAACAAAGCATTGCATGACACTTTTGCTGCTTTTGGCACTGTACTTTCTTGTAAGGTGGCTACTGATAACAATACTGGTCTGCCGAAAGGGTATGGTTTTGTTCAGTTTGATAATGAAGATTCTGCCCAGAATGCAATCAAACAGTTGAATGGCATGTTGATCAATGACAAGCAAGTTTACGTTGGACTTTTTATCCGGCGTCAGGCTCGGACAAATGGATCACCTAAATTTACTAATGTGTATGTGAAAAACTTTTCTGAAGCATTCACAGACGAGGATCTCAATAAGTTGTTTGGCTCTTACGGTACCATAACCAGTGCAACTATCATGAAAGATATGAATGGAAAATCTAGATGTTTTGGTTTTGTAAATTTTCAAAATCCAGATTCAGCGGCAACTGCAGTGGAAAGACTAAATGGTACTGCCATTGATGATAAGGTTTTATATGTGGGGAGGGCTCAGAAGAAAGCAGAAAGAGAGGCTGAATTGAAAGCCAAAATTGAGCAAGAAAGAATAAGTAGATATGAAAAATTACAAGGTGCTAATTTGTATTTGAAAAATCTTGATGACAACTTCAGTAATGAAAATTTGAAAGATCTTTTTTCTCAGTATGGAACTATAACATCTTGCAAGGTGACTGTCGACTCAAATGGACATAGCAAGGGATCTGGTTTTGTGGCTTTTTCTACACCAGAGGAAGCAAGTAAAGCTTTGAATGAAATGAATGGCAAGTTGATTGGACGAAAGCCACTTTACGTTGCTGTGGCCCAGCGCAAAGAAGAGAGGAAAGCTCATTTACAGGCTCATTTTGCTCAAATCCGAACATCGGGTGGAATGACACCTCTGCCTGCTGGCATTCCTGTTTATCATCATCCAGGGGCACCAAGACTTGCTCCTCAACAATTATATTTTGGTCAAGGCAACCCTGGCTTCATGCCCCCACAGCCTGCTGGATATTCATTCCAGCAGCAAATTTTGCCTGGAATGAGGCCTGGGTTTGCCCCCAATTTCATTACTCCTTATCCCCTTCAAAGGCAGGCTCAGTCTGGACATAGGACTGGAGTTCGACGAAATGGAAATCTTCAACCAATGCAACAGAGCCAGATGATGATGCATCGTAATTCCAACCAAGGGTTTCGATATATGCCTAATGGTCGAAATGGTCCAACTATGCCCATGCACTTTGATGGTTCTGGAATTAATGCAGCACCTAATGATGGTCAGCGTTCTGGAGCATTGTCTACTACACTTGCATCGGCTCTTGCGTCTGCCACTCCAGAAAATCAGCGCATGATGTTGGGTGAACATCTATATCCTCTTGTGGAGCGGCTGACATTAAACCAATACACGGCAAAGGTGACTGGGATGCTACTGGAAATGGACCAGTCCGAAGTAATCAATCTCATCGAATCTCCTGAGGACCTGAAGACAAAGGTGTCTGAAGCTATGCAGGTATTATATGAGGCTGCACCTGAATCTGGAGTTGCTGATCAGATTGGATCGTTATCCGTAAATGAATGA 1914 0.4263 MAAAVSSPMTQSVTATAAPVTALGGGSFSNASLYVGDLDGNVNEEQLYDLFSQVAQIVSIRVCRDQSKRSSLGYAYVNFSNAQDATNAMELLNFTPVNGKPIRIMFSQRDPSIRKSGQGNVFIKNLDTSIDNKALHDTFAAFGTVLSCKVATDNNTGLPKGYGFVQFDNEDSAQNAIKQLNGMLINDKQVYVGLFIRRQARTNGSPKFTNVYVKNFSEAFTDEDLNKLFGSYGTITSATIMKDMNGKSRCFGFVNFQNPDSAATAVERLNGTAIDDKVLYVGRAQKKAEREAELKAKIEQERISRYEKLQGANLYLKNLDDNFSNENLKDLFSQYGTITSCKVTVDSNGHSKGSGFVAFSTPEEASKALNEMNGKLIGRKPLYVAVAQRKEERKAHLQAHFAQIRTSGGMTPLPAGIPVYHHPGAPRLAPQQLYFGQGNPGFMPPQPAGYSFQQQILPGMRPGFAPNFITPYPLQRQAQSGHRTGVRRNGNLQPMQQSQMMMHRNSNQGFRYMPNGRNGPTMPMHFDGSGINAAPNDGQRSGALSTTLASALASATPENQRMMLGEHLYPLVERLTLNQYTAKVTGMLLEMDQSEVINLIESPEDLKTKVSEAMQVLYEAAPESGVADQIGSLSVNE* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2091 637 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 389 IPR000504 GO:0003723
Vra8g2091 637 SMART rrm1_1 32 105 IPR000504 GO:0003723
Vra8g2091 637 SMART rrm1_1 210 282 IPR000504 GO:0003723
Vra8g2091 637 SMART rrm1_1 313 385 IPR000504 GO:0003723
Vra8g2091 637 SMART rrm1_1 120 193 IPR000504 GO:0003723
Vra8g2091 637 CDD RRM2_I_PABPs 117 193 IPR045305 -
Vra8g2091 637 SUPERFAMILY PABC (PABP) domain 496 623 IPR036053 GO:0003723
Vra8g2091 637 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 119 197 IPR000504 GO:0003723
Vra8g2091 637 PANTHER POLYADENYLATE-BINDING PROTEIN 23 624 - -
Vra8g2091 637 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 31 617 IPR006515 GO:0003723
Vra8g2091 637 MobiDBLite consensus disorder prediction 525 544 - -
Vra8g2091 637 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 109 IPR000504 GO:0003723
Vra8g2091 637 CDD RRM3_I_PABPs 208 287 - -
Vra8g2091 637 Gene3D - 116 203 IPR012677 -
Vra8g2091 637 Gene3D - 26 115 IPR012677 -
Vra8g2091 637 SUPERFAMILY RNA-binding domain, RBD 208 393 IPR035979 GO:0003676
Vra8g2091 637 SUPERFAMILY RNA-binding domain, RBD 31 200 IPR035979 GO:0003676
Vra8g2091 637 Gene3D - 204 309 IPR012677 -
Vra8g2091 637 SMART poly_2 556 620 IPR002004 GO:0003723
Vra8g2091 637 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 279 IPR000504 GO:0003723
Vra8g2091 637 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 382 IPR000504 GO:0003723
Vra8g2091 637 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 121 190 IPR000504 GO:0003723
Vra8g2091 637 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 103 IPR000504 GO:0003723
Vra8g2091 637 CDD RRM1_I_PABPs 32 111 - -
Vra8g2091 637 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 544 622 IPR002004 GO:0003723
Vra8g2091 637 Gene3D - 310 409 IPR012677 -
Vra8g2091 637 PANTHER RNA BINDING PROTEIN 23 624 - -
Vra8g2091 637 Gene3D - 543 621 - -
Vra8g2091 637 Pfam Poly-adenylate binding protein, unique domain 552 617 IPR002004 GO:0003723
Vra8g2091 637 Coils Coil 281 309 - -
Vra8g2091 637 CDD RRM4_I_PABPs 311 389 - -
Vra8g2091 637 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723
Vra8g2091 637 SMART rrm2_1 32 105 IPR003954 GO:0003676
Vra8g2091 637 SMART rrm2_1 120 193 IPR003954 GO:0003676
Vra8g2091 637 SMART rrm2_1 313 385 IPR003954 GO:0003676
Vra8g2091 637 SMART rrm2_1 210 282 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2091 Vra-Chr8 38730066 38734205 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2091 1 617 Eukaryotic Initiation Factors Gene Family AT1G22760 56.075 0.0 673
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2091 K13126 - gmx:100783163 1058.13