Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2083 ATGGGTGAGGCTTCGGGAGATGGTTCCGCTGATTGTTTCAGCCAGATGATGTCGTCGATGCCGGGTTTTCGCTTCCATCCTACGGATGAGGAGTTGGTGATGTACTATCTGAAGCGGAAGATTTGTGGGAAGAGGCTGAAGCTCAACGTTATTCGTGAAACCGATGTGTATAAGTGGGATCCTGAGGAGTTGCCTGGGCAATCCATACTGAAAACTGGAGATAGGCAATGGTTCTTTTTTTGTCACAGAGATAGGAAATATCCTAATGGTGCAAGGTCTAATCGAGCCACCAGACATGGATACTGGAAGGCAACAGGAAAGGATCGTAATGTGATATGCAATTCTAGGGCAGTTGGAGTGAAAAAAACCCTGGTTTTCTACATAGGCAGAGCTCCCAGTGGAACGCGGACTGATTGGGTTATGCACGAATACACCATGGATGAAGAGGAGCTTAAGAGATGCCAAGGTGTTAAGGACTACTATGCACTTTATAAGGTTTTCAAGAAAAGTGGACCTGGTCCTAAAAATGGTGAACAGTATGGTGCACCATTTAATGAACAAGAGTGGGCAGCGGATGATGACATTGTGGATTTTAATATTAACATAACTGATCAGGAGGATCCAAATGTTGTCCCTGAGAATGGGAGTTCACTGCATCCTTTGCTTGATGATGAAATCAATGACATCATTAGAGAAATTTTGGATGATGAGCTTGTCCTTGATCAGCAGCATGTGAATGGTTATCTTGACTTTCCTCAGGTTGTTACTGAAGAAACACAAAGTACTGTTGTGGATCAGTTCTCTGAGGTGCCTATGTACAGTGAGACAACCGATCCTTGCTGTCAATATTTTGATGTGCAGCCCAGCTTTGACTTCAACCAGCCAGTTACTTCTCATTTACAAGTTTCTGAAGCTTCTGAGGTTTCTTCTGCCTCCAACATCCAAAGAAAGGGGCTTGACTTGGATAAGGTTGGCTTTTTGGAAATTAATGATCTCATTGATAATGATCCTGCACTGGCAAATGTGGAAAATCCAGTGGAGTACCCGCAGTTTGAAGACGGGTTAAGTGAATTTGATCTCTACCAAGATGCAGAGATGTTTCTTCGTGACCTGGGGCCAATAATTCACGAACCAGATTCACGTGCATATACAAATGCGATTGTCAGCAACAATATCGAAAGTCAAAGTTTCCAGTTGCAATCCGGCCGAGAGGATGCCAACCAAACTGTTGGTGAATTCTGGATGCATGGTGAAAGAAACACCCTAATTCCATCAGAAGAAGGCTTTGTCGATTCTTTCTCACTATCATCCCCAGGTGTTGTGTGTGAATCTCTCAGCTTTCCTACGGAAGGCAATTACAATCAAAGTAGCACAATGGAAGATGTTTCTACAAGTAGCTTCTCCTCTTCTCTCTGGGCCTTTGTTGAGTCAATACCTACTACTCCTGCATCAGCTGCAGAAAGTGCTTTGGTGAATCGAGCTTTGAATCGAATGTCTAGCTTCAGCAGGGTAAAGATCAGGCACACAAACATTACTGCAGGTAAAGACACTGCAACTACGAAGAAAGCAGGCAGAAAGGGATTTTCATTCCTTTTCTTCCCTATTCTTATTGCTTTATGTGCTTTTTTGTGGGTTTTTGTTGGAAACTTAAGATCATTAGGGAGATGTATCTCTCCTTGA 1680 0.4321 MGEASGDGSADCFSQMMSSMPGFRFHPTDEELVMYYLKRKICGKRLKLNVIRETDVYKWDPEELPGQSILKTGDRQWFFFCHRDRKYPNGARSNRATRHGYWKATGKDRNVICNSRAVGVKKTLVFYIGRAPSGTRTDWVMHEYTMDEEELKRCQGVKDYYALYKVFKKSGPGPKNGEQYGAPFNEQEWAADDDIVDFNINITDQEDPNVVPENGSSLHPLLDDEINDIIREILDDELVLDQQHVNGYLDFPQVVTEETQSTVVDQFSEVPMYSETTDPCCQYFDVQPSFDFNQPVTSHLQVSEASEVSSASNIQRKGLDLDKVGFLEINDLIDNDPALANVENPVEYPQFEDGLSEFDLYQDAEMFLRDLGPIIHEPDSRAYTNAIVSNNIESQSFQLQSGREDANQTVGEFWMHGERNTLIPSEEGFVDSFSLSSPGVVCESLSFPTEGNYNQSSTMEDVSTSSFSSSLWAFVESIPTTPASAAESALVNRALNRMSSFSRVKIRHTNITAGKDTATTKKAGRKGFSFLFFPILIALCAFLWVFVGNLRSLGRCISP* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2083 559 Pfam No apical meristem (NAM) protein 21 145 IPR003441 GO:0003677|GO:0006355
Vra8g2083 559 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 18 558 - -
Vra8g2083 559 PANTHER NAC TRANSCRIPTION FACTORS 2 18 558 - -
Vra8g2083 559 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
Vra8g2083 559 Gene3D NAC domain 28 171 IPR036093 GO:0003677|GO:0006355
Vra8g2083 559 SUPERFAMILY NAC domain 15 169 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2083 Vra-Chr8 38664938 38668745 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2083 6 557 NAC Transcription Factor Family AT1G34190 44.915 2.19e-132 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra8g2083 NAM 3.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2083 - - gmx:100794925 906.746