Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2082 ATGGCCACCTCCCAGTCCCAGCATCGCTGCGTTTTCGTTGGGAATATACCGTATGATGCCACAGAGGAACAGCTTGTCGAAATCTGCCAGGAGGTTGGCCCAGTAGTCTCATTCAGATTAGTTATTGACAGGGAAACTGGGAAACCTAAAGGTTATGGATTCTGTGAGTATAAGGATGAAGAGACAGCTTTAAGCGCTCGACGAAATCTTCAGGGTTATGAAATTAATGGCAGGCAATTACGTGTTGATTTTGCCGAAAATGACAAAGGGACTGACAGAAATAGAGAACAGGGTCGTGGCGGGCCTGGAATGACAACAAATGTTGATCCTCAGAAACAAGTTGGTGGCCCAGCTGGGGAAGCTGTTCAGCATCAGCCTATCGGTCTTCATATTGCCATAACAGCTGCAACTGTTATGACAGCGGCTCTAGGTGGTGCTCAGTTTGGCATCCAGTCAAATCAAAATAGTTTGCAGAGTCAGTCAGCATTGGCACATGATCCTTTAACTCTGCATCTGGCCAAAATGTCCAGGAGTCAGCTTACGGAGATGATATCTGAACTCAAGGGAATGGCTACACAAAACAAGGATCTGGCTCGCCAGCTGTTGCTTTCAAGGCCACAGTTGCCCAAGGCTCTTTTCCAGGCTCAAATAATGCTAGGAATGGTGTCTTCCCAAGTGTTACAAATGCCAAACCTTAGGCTGGTTTCAGATCAACCCTCACAGTCTTTAATGAATGAAGGTCAGCTGGCTCAGCCACCATTGGTTCAAACTCTGCCTGGCCTTCGCCCTCATGGGCAGAGCAAATTGCAGTCTGGTTTGACACCTTATGCTCAAGAAGGCCAAGTCAACACCATACTTCATAATCCTCTGGCTCCTAATCAATTAACTGCTCATCCAAAGCCTCCAGTGCAGCCCCGAATTCCCGTTCAACAACATCCAAACAACCTTGTATTGCCTGGAACTTTATCAGGGCAGCCTAACTTATTACTTCCTTCTGTGCGCCCAGGTCTGGGAAGTTTGTCTGTCAGGCCTCCAATTCAACCGACAACTTCAACTGCTCTAAACCAGCAAATGCATGTCTCTTTGCTACAAAATTCTGCACATGTTGGAAACTCAACTGTCGGACATAATATTCAAATGGTTCGTCCAGATGCCAACTTTCAGCCTGGTTCCTCCATATCGGCGTCTACTTCTCAGTTATCGAGTAAAGAATCTTTTTCTCGCCCATCAAAGCTCATGAAATTGGATGAGGGAAGGAGTACACCCCTTTCTACTGGGATGTCAGAGGTGCCTGTCACTGATGGACCGTCTCATACTCTTGGAAGAAGCTCATTGCCTGTACTTGCTACTCCTAAAGGAGAAGGGCAATACTCTGAGCTACAATCTTCTCAGCTTCCTCCTGATGTGGAGTCTGTTTTGCTGCAACAAGTATTGAATCTGACACCAGAGCAATTGAGTTCCTTACCACCAGAGCAGCAGCAACAGGTAATTCAGCTCCAGCAGGCTCTTCGGCGAGATCAGATGCAGCCCTCATAA 1536 0.4701 MATSQSQHRCVFVGNIPYDATEEQLVEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGTDRNREQGRGGPGMTTNVDPQKQVGGPAGEAVQHQPIGLHIAITAATVMTAALGGAQFGIQSNQNSLQSQSALAHDPLTLHLAKMSRSQLTEMISELKGMATQNKDLARQLLLSRPQLPKALFQAQIMLGMVSSQVLQMPNLRLVSDQPSQSLMNEGQLAQPPLVQTLPGLRPHGQSKLQSGLTPYAQEGQVNTILHNPLAPNQLTAHPKPPVQPRIPVQQHPNNLVLPGTLSGQPNLLLPSVRPGLGSLSVRPPIQPTTSTALNQQMHVSLLQNSAHVGNSTVGHNIQMVRPDANFQPGSSISASTSQLSSKESFSRPSKLMKLDEGRSTPLSTGMSEVPVTDGPSHTLGRSSLPVLATPKGEGQYSELQSSQLPPDVESVLLQQVLNLTPEQLSSLPPEQQQQVIQLQQALRRDQMQPS* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2082 511 MobiDBLite consensus disorder prediction 382 408 - -
Vra8g2082 511 MobiDBLite consensus disorder prediction 421 444 - -
Vra8g2082 511 Gene3D - 464 510 IPR038192 -
Vra8g2082 511 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 1 506 - -
Vra8g2082 511 Pfam Hinge domain of cleavage stimulation factor subunit 2 158 228 IPR025742 -
Vra8g2082 511 Gene3D - 149 230 - -
Vra8g2082 511 MobiDBLite consensus disorder prediction 382 465 - -
Vra8g2082 511 Pfam Transcription termination and cleavage factor C-terminal 473 505 IPR026896 GO:0031124
Vra8g2082 511 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Vra8g2082 511 Gene3D - 1 120 IPR012677 -
Vra8g2082 511 SUPERFAMILY RNA-binding domain, RBD 5 105 IPR035979 GO:0003676
Vra8g2082 511 MobiDBLite consensus disorder prediction 83 120 - -
Vra8g2082 511 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
Vra8g2082 511 SMART rrm1_1 10 83 IPR000504 GO:0003723
Vra8g2082 511 CDD RRM_CSTF2_CSTF2T 11 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2082 Vra-Chr8 38652886 38660059 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2082 11 84 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 1.74e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2082 K14407 - gmx:100794399 818.535