Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2078 ATGGAACATTTCATCTTTCTGGTACTCCTCGTACTGTTTCTCATCACCAGCCGGTTCATTCTCAACCGCCGCGTTAAAAAAAACCAAGCCCCCGGTCCAACCGGCTTGCCCATAATCGGAAACCTCCACCAACTGGGCCCCAAGCCACACTGCGCCCTCTCCTCTCTGGCCCAAACCTACGGCCCAATCATGTCCCTCCGTCTGGGCTCAGTCACCGTGGCCGTGGTCTCTTCTCCAGCCGTGGCCCAAGAAATCCTCCAAAAGAACGACCAAGCCTTCGCCAGCCGCCCCATCCCAGAATCCGTGGCGGCGCAGCCCAACGTGGGCGACACCCTAGCCTGGGCCCCCGCCGACTCACGGTGGCGCAACCGCCGCCGCGTCTGTACCACTCAGATTTTTACCGCCCAACGTCTGGACCTGCTACAGCACCTCCGGCACGGCAAAGTACAGGAACTGGTTGAGCACCTTCGGAAGCAAGGTTCGAATGGAAAATGTGTTCCAATTGGAGATCTGGCATTCGCGACGATGCTGAACCTGGTATCGAACACGGTGTTTTCGGAGGATTTGGTAGATCCTGAGTTCGAGAGTGCAGGGGAGTTTAAGGAGCTGGTGTGGAGGATCATGGAGGACGCAGGGAGGGTTAACCTCTCAGACTACTTTCCTTTGCTGAAGCCGTTTGATTTGCAGGGCGTTAAGGGACATGTGGCGGTTTCATACGTCAGGTTGCATGATATTTTCGACCGCATGATTCGGAAACGTGTTGCGGAAAGAGAGGGTCCGCGTGTCGCCAAGGGGGATTTCTTGGATGTGTTGCTTGATCAGTGTGAACTAGGTGAGGCGTCCCATTTCACCGTTGAAAGCATTAAGCCGTTGATTCTGGATTTGTTCATAGCGGGGAGTGACACATCAGGATCAACAACAGAGTGGGCAATGGCAGAGCTTCTACGGAATCCAGAAGTAATGCAGAAAGCAAGAGAGGAACTGATGGAAGTGATTGGGTCGTCGAACGTTGAAATAAGAGAATCAGACATTCCTAGACTTCCGTACATGAGAGCAATAGTGAAAGAAACCCTTCGGCTTCATCCAGCTGTTCCCCTTCTATTGCCGTACGTTGCAGGAGAGGATGTTGAAGTGAGTGGTTACACCATTGAGAAAGGGAACCAAGTCCTGATCAATGCATGGTCGATTGGGAGGAACCCCCAGTTTTGGGATGAGCCATTGTCGTTTCAGCCCGAAAGGTTTCTGAGATCGAACATAGATTTCAAAGGCAGGGATTTCGAGTATTTGCCTTTTGGTGGTGGTAGGAGAATTTGCCCTGGCTTGCCACTTGCTAATCGGATGATCACTTTAATGTTGGCTGCGTTTCTCCACTCTTTCCGCTGGGAGCTTCCTCCGGGTGTCACTCCTCACACCCTTGACATGACTGAGCAGTATGGAATCACCTTGAAGAAGCTTTCTCCTCTTTATGCTATTCCCATACCACTCTCAAATTCCCCCGAATTCAATCTTTTTTTCTCTGTAAAAGGTCAATGTAACAAGTTTCGTCATTAA 1551 0.5145 MEHFIFLVLLVLFLITSRFILNRRVKKNQAPGPTGLPIIGNLHQLGPKPHCALSSLAQTYGPIMSLRLGSVTVAVVSSPAVAQEILQKNDQAFASRPIPESVAAQPNVGDTLAWAPADSRWRNRRRVCTTQIFTAQRLDLLQHLRHGKVQELVEHLRKQGSNGKCVPIGDLAFATMLNLVSNTVFSEDLVDPEFESAGEFKELVWRIMEDAGRVNLSDYFPLLKPFDLQGVKGHVAVSYVRLHDIFDRMIRKRVAEREGPRVAKGDFLDVLLDQCELGEASHFTVESIKPLILDLFIAGSDTSGSTTEWAMAELLRNPEVMQKAREELMEVIGSSNVEIRESDIPRLPYMRAIVKETLRLHPAVPLLLPYVAGEDVEVSGYTIEKGNQVLINAWSIGRNPQFWDEPLSFQPERFLRSNIDFKGRDFEYLPFGGGRRICPGLPLANRMITLMLAAFLHSFRWELPPGVTPHTLDMTEQYGITLKKLSPLYAIPIPLSNSPEFNLFFSVKGQCNKFRH* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2078 516 Gene3D Cytochrome P450 18 488 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g2078 516 PRINTS E-class P450 group I signature 57 76 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g2078 516 PRINTS E-class P450 group I signature 81 102 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g2078 516 PRINTS E-class P450 group I signature 287 304 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g2078 516 PRINTS E-class P450 group I signature 307 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g2078 516 PRINTS E-class P450 group I signature 351 369 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g2078 516 PRINTS E-class P450 group I signature 392 416 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g2078 516 PRINTS E-class P450 group I signature 428 438 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g2078 516 PRINTS E-class P450 group I signature 438 461 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g2078 516 Pfam Cytochrome P450 31 484 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g2078 516 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 5 493 - -
Vra8g2078 516 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 431 440 IPR017972 GO:0005506|GO:0016705
Vra8g2078 516 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 5 493 - -
Vra8g2078 516 SUPERFAMILY Cytochrome P450 23 494 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g2078 516 PRINTS P450 superfamily signature 298 315 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g2078 516 PRINTS P450 superfamily signature 352 363 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g2078 516 PRINTS P450 superfamily signature 429 438 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra8g2078 516 PRINTS P450 superfamily signature 438 449 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2078 Vra-Chr8 38635738 38638775 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2078 4 493 Cytochrome P450 AT2G45550 44.177 9.65e-145 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2078 - - vra:106769993 1024.62