Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2074 ATGGAAGATGTTCCTTCAATGATTTACAAAAACCCCATTAGGAGAAACTCTAGGCGATCTACAATGTATCTGGGCGTGAGAAAAAGGCCATGGGGAAGATATGCAGCTGAGATTAGGAACCCTTATACCAAAGAGAGACACTGGCTTGGCACATTTGACACTGCTGAAGAGGCTGCTATAGCCTATGATCTTTCATCTATCAACATTTCTGGTATCAATGCTCGAACCAATTTTCATTACCCTTTTCTGTCTCTTCCACCACCACCTATCTCATTGCCTCCTCCACCGCCGCCGCCTACCCCGGAGCTGCATCAAAGTGTTGGAGTTTGTCCGGAGATGAACTCTGCTTTCGATGGCGATGATGAATCTCTGGTTATTGCTTCCATTTTGCAAAGCTTTTCTAACTCTGGTAACTGTTCTTTTTAG 426 0.446 MEDVPSMIYKNPIRRNSRRSTMYLGVRKRPWGRYAAEIRNPYTKERHWLGTFDTAEEAAIAYDLSSINISGINARTNFHYPFLSLPPPPISLPPPPPPPTPELHQSVGVCPEMNSAFDGDDESLVIASILQSFSNSGNCSF* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2074 141 CDD AP2 23 78 IPR001471 GO:0003700|GO:0006355
Vra8g2074 141 Pfam AP2 domain 24 64 IPR001471 GO:0003700|GO:0006355
Vra8g2074 141 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Vra8g2074 141 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Vra8g2074 141 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 132 - -
Vra8g2074 141 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF088 1 132 - -
Vra8g2074 141 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Vra8g2074 141 Gene3D AP2/ERF domain 22 80 IPR036955 GO:0003700|GO:0006355
Vra8g2074 141 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Vra8g2074 141 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2074 Vra-Chr8 38613016 38613441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2074 23 80 AP2-EREBP Transcription Factor Family AT1G12890 79.310 3.07e-29 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra8g2074 AP2 5.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2074 - - var:108324731 254.218