Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2072 ATGGAGAGAAAGTTGATGGATTTGAGTTTCATTTGTTGGATATTGTTGATTCATCCACTATGCCTGATTTCTGCTAACATGGAAGGAGATGCTTTGCATAGTCTGAGGACTAATTTACAGGACCCTAACAATGTTTTGCAAAGTTGGGATCCTACACTCGTGAATCCATGTACATGGTTTCATGTAACATGCAACAATGATAATAGTGTTATCAGAGTTGATCTGGGGAATGCTGCTTTATCCGGTCAACTTGTTCCGCAGCTTGGTCAGCTCAAGAATTTGCAGTATTTGGAACTTTACAGCAATAACATTACTGGCCCTATCCCAAGTGACCTGGGGAATCTTACTAACCTGGTGAGCTTGGATCTGTACCTAAACCGTTTCACTGGCCCAATCCCAGATTCATTGGGCAAGTTGTCAAAATTGCGTTTCCTTCGGCTTAACAACAACAGCTTGTCAGGTCCTATACCCATGTCGCTGACTAATATTACGGCTCTCCAAGTTCTGGATTTGTCTAATAATCATCTTTCAGGAGTGGTTCCCGACAATGGCTCCTTCTCATTATTCACTCCTATCAGTTTTGCAAATAACTTGGATCTATGTGGACCCGTTACTGGGCACCCCTGTCCTGGCTCTCCTCCATTTTCTCCTCCTCCTCCTTTTGTTCCTCCACCTCCAATTTCCGCCCCAGGAGGTAATAGTGCCACTGGAGCAATAGCTGGAGGAGTTGCTGCTGGTGCTGCTCTATTGTTTGCTGCTCCTGCAATTGCATTTGCCTGGTGGCGTAGAAGGAAACCGCAAGAGTTTTTCTTTGATGTGCCTGCTGAAGAGGATCCTGAAGTTCATCTAGGACAACTTAAAAGGTTCTCTTTACGAGAACTGCAAGTTGCAACAGATACTTTCAGCAATAAGAACATTCTCGGGAGGGGAGGATTTGGTAAGGTGTACAAAGGACGGTTGGCAGATGGTTCATTGGTGGCTGTGAAACGGTTGAAAGAGGAACGCACACCTGGTGGGGAACTTCAGTTTCAGACTGAAGTAGAGATGATTAGCATGGCTGTGCATAGAAATCTCCTTCGACTACGTGGGTTTTGTATGACACCAACAGAAAGGCTACTTGTTTATCCCTACATGGCTAACGGAAGTGTTGCCTCATGCTTAAGAGAGCGTCCTCCACATCAAGAACCCCTGGATTGGCCAACTAGGAAAAGAATAGCTTTGGGATCTGCAAGGGGTCTTTCATATTTGCATGATCACTGTGATCCAAAGATTATTCATCGCGATGTGAAAGCTGCAAACATATTGCTGGATGAAGAGTTTGAGGCTGTTGTTGGGGACTTTGGATTGGCCAAACTCATGGATTACAAGGACACCCATGTGACAACTGCTGTAAGGGGCACAATTGGGCACATAGCTCCTGAGTACCTATCCACTGGTAAATCTTCAGAGAAAACCGATGTTTTTGGTTATGGTATCATGCTTCTGGAGCTGATCACTGGACAGAGAGCTTTTGACCTTGCTCGGCTTGCAAATGACGACGATGTTATGCTGCTTGATTGGGTAAAAGGACTCCTGAAGGAGAAAAAGCTTGAAATGTTGGTTGATCCTGATCTACAAAACAATTACATAGAAGCTGAGGTAGAACAATTAATCCAGGTTGCACTGCTCTGCACGCAAGGTTCCCCTATGGACCGACCAAAGATGTCAGAAGTGGTGAGAATGCTTGAAGGTGATGGCTTGGCAGAGAGATGGGATGAGTGGCAAAAGGTGGAAGTTCTCCGGCAAGAGGTGGAGCTGGCCCCTCATTCCAATTCTGACTGGATTGTGGACTCGACTGAAAATCTGCATGCAGTTGAGTTATCTGGTCCAAGGTGA 1875 0.4539 MERKLMDLSFICWILLIHPLCLISANMEGDALHSLRTNLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGQLVPQLGQLKNLQYLELYSNNITGPIPSDLGNLTNLVSLDLYLNRFTGPIPDSLGKLSKLRFLRLNNNSLSGPIPMSLTNITALQVLDLSNNHLSGVVPDNGSFSLFTPISFANNLDLCGPVTGHPCPGSPPFSPPPPFVPPPPISAPGGNSATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVATDTFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPHQEPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQNNYIEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEVLRQEVELAPHSNSDWIVDSTENLHAVELSGPR* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2072 624 SUPERFAMILY L domain-like 28 191 - -
Vra8g2072 624 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 8 624 - -
Vra8g2072 624 PANTHER LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED 8 624 IPR031048 GO:0004675|GO:0005102|GO:0006468
Vra8g2072 624 Gene3D Ribonuclease Inhibitor 24 211 IPR032675 -
Vra8g2072 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672|GO:0006468
Vra8g2072 624 SMART serkin_6 301 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2072 624 SUPERFAMILY Protein kinase-like (PK-like) 280 576 IPR011009 -
Vra8g2072 624 ProSiteProfiles Protein kinase domain profile. 301 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2072 624 Pfam Protein kinase domain 302 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2072 624 CDD STK_BAK1_like 307 578 - -
Vra8g2072 624 Gene3D Phosphorylase Kinase; domain 1 270 377 - -
Vra8g2072 624 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Vra8g2072 624 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Vra8g2072 624 Gene3D Transferase(Phosphotransferase) domain 1 378 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2072 Vra-Chr8 38583495 38590333 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2072 6 624 Receptor kinase-like Gene Family AT1G71830 89.120 0.0 1048
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vra8g2072 Pkinase 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2072 K13418 - gmx:100789884 1136.71