Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2061 ATGGACCCTCTCTCTGCCACCAAACACCACAACAATCTCTCCAAGCCTTCCTCCCTCCACATGGAGGCTCCGCCGCCGGAACCCAGTCCTCTCCGGAAGATCATGGTTGTGGCATCCATCGCCGCAGGGGTGCAGTTCGGCTGGGCCCTTCAGCTCTCCCTCCTCACCCCCTACGTCCAGTTGCTAGGAATTCCCCACACTTGGGCCGCCTTCATATGGCTCTGCGGCCCAATCTCCGGCATGCTGGTCCAGCCCATTGTCGGCTACCACAGCGACCGCTGCACTTCCCGCTTCGGCCGCCGTCGCCCCTTCATCGCCGCCGGAGCCCTGGCCGTTGCCATCGCCGTCTTTCTCATAGGCTACGCCGCCGACCTTGGCCACATGTTCGGCGACTCCCTCACCAAGAAAACCCGCCCACGCGCCATCGCCATCTTCGTCGTCGGATTCTGGATCCTGGACGTGGCCAACAACATGCTCCAGGGCCCCTGCCGTGCCCTCCTCGCCGACCTCTCCGCCGGCGACCACCGCAAGACGCGCAACGCAAACGCCTTCTTCTCCTTCTTCATGGCCGTGGGCAACGTCCTGGGGTACGCCGCGGGGTCCTACAGCGGCCTCCACCGCGTCTTCCCCTTCACCAAAACTAAAGCCTGCGACGTCTACTGCGCCAATCTGAAAAGCTGCTTCTTCCTATCCATAGCGCTCCTCCTCAGTCTGTCCACCATCGCCCTCACTTACGTGAAGGAGAAAACGGTGCCGTCGGAAAAAAGCACCGTGAGCGTTGCGGAAGAAGATGGGTCCCACGGGGGCATGCCCTGTTTTGGGCAGTTATTCGGTGCGTTTCGGGAACTGAAGCGTCCCATGTGGATTCTTCTTTTGGTGACGTGTCTCAACTGGATTGCGTGGTTCCCCTTCCTTCTCTTCGACACCGACTGGATGGGCCATGAGGTCTACGGCGGAACCGTCGGAGAAGGAAAGGCCTACGATAGAGGCGTTCGCGCCGGTGCGTTAGGTCTCATGTTGAACTCTCTGGTCCTCGGAGCCACTTCCTTGGGCGTCGATGTCCTCGCGCGTGGAGTCGGGGGCGTCAAGAGGCTCTGGGGAATTGTCAACTTCCTTCTCGCTGTCTGTTTGGGCATGACCGTTTTGGTCACCAAGATGGCCCAGCATTCTCGCCAGTACACTGACCTCCCCGGCGGCATCCACGAGCCCCTGCCTCCTTCCTCCGCCGTCAAAGCCGGCGCGTTGGCCCTCTTTGCCGTCCTCGGAATCCCTCTGGCGATTACTTACAGCATACCCTTTGCTCTGGCGTCAATATTCTCCACCACCTCGGGGGCAGGACAAGGGTTATCTCTGGGAGTCCTCAATCTTGCAATCGTCATACCACAGATGGTGGTGTCTGTGACCAGTGGACCATGGGATGATCAATTTGGCGGCGGTAACTTGCCGGCGTTCGTGGTGGGTGCGGTGGCGGCTGCGGCCAGTGGCATTCTATCCATACTCCTGCTGCCATCTCCACCGCCGGATTTGGCAAAAGCTGCAACCGCGGCAGGGGGAGGGTTCCATTAA 1566 0.6054 MDPLSATKHHNNLSKPSSLHMEAPPPEPSPLRKIMVVASIAAGVQFGWALQLSLLTPYVQLLGIPHTWAAFIWLCGPISGMLVQPIVGYHSDRCTSRFGRRRPFIAAGALAVAIAVFLIGYAADLGHMFGDSLTKKTRPRAIAIFVVGFWILDVANNMLQGPCRALLADLSAGDHRKTRNANAFFSFFMAVGNVLGYAAGSYSGLHRVFPFTKTKACDVYCANLKSCFFLSIALLLSLSTIALTYVKEKTVPSEKSTVSVAEEDGSHGGMPCFGQLFGAFRELKRPMWILLLVTCLNWIAWFPFLLFDTDWMGHEVYGGTVGEGKAYDRGVRAGALGLMLNSLVLGATSLGVDVLARGVGGVKRLWGIVNFLLAVCLGMTVLVTKMAQHSRQYTDLPGGIHEPLPPSSAVKAGALALFAVLGIPLAITYSIPFALASIFSTTSGAGQGLSLGVLNLAIVIPQMVVSVTSGPWDDQFGGGNLPAFVVGAVAAAASGILSILLLPSPPPDLAKAATAAGGGFH* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2061 521 Gene3D MFS general substrate transporter like domains 28 516 IPR036259 -
Vra8g2061 521 PANTHER SUGAR TRANSPORTER 22 512 - -
Vra8g2061 521 TIGRFAM GPH_sucrose: sucrose/H+ symporter 30 507 IPR005989 GO:0005887|GO:0008515|GO:0015770
Vra8g2061 521 CDD MFS_SLC45_SUC 34 481 - -
Vra8g2061 521 MobiDBLite consensus disorder prediction 1 26 - -
Vra8g2061 521 PANTHER SUCROSE TRANSPORT PROTEIN SUC7-RELATED 22 512 - -
Vra8g2061 521 Pfam MFS/sugar transport protein 42 300 - -
Vra8g2061 521 SUPERFAMILY MFS general substrate transporter 32 506 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2061 Vra-Chr8 38459324 38462192 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2061 27 521 Sucrose Transporter Gene Family AT1G22710 69.522 0.0 688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2061 K15378 - gmx:547679 925.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1283 1 18877019 18879136 Vra8g2061 8 38459324 38462192 PCT
Vra8g2061 8 38459324 38462192 Vra1g1285 1 18990718 18993366 PCT