Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2057 ATGGGTACGTTGAATCTACTCTTGTTCTTCTCTTTGGTGAGTCTGTGTGCTATGGCTGCTGCGAAGGTGGTGCTTATTGGGAACAATATTACTCTGTCCTTCGATGATATTGAAGCTAATTTTGCTCCAACAGTCAAAGGTTCTGGAGAATATGGGGTCTTATATTTGGCAGAGCCACTTGATGCGTGTACAGACCTGACAAATAAAGTTGAACGACTTCCCAATGTGAGTTCACCTTTTGCTTTGGTCGTTAGAGGGGGATGTAGCTTTGAGGAGAAAGTTAGAAGGGCACAAAAGGCTGGCTTCCAAGCTGTAATTGTCTATGATAATGAAGAAGACGGTGTCTTGGTTGCAATGGCAGGAAATTCTGCTGGGATAAGAATACATGCAGTATTTGTATCTAAAGCTTCGGGTGAAATACTAAAGAAATATGCTGGGTGGCCTAATGTGGAAATATGGCTAATTCCAACTTTTGAAAACTCAGCATGGTCTATCATGGCAATTTCATTTATTTCCCTACTTGCAATGTCTGCAGTGCTGGCCACTTGTTTCTTTGTCCGCAGACATCGCATAAGAAGAGAAAGGCCTCGGGCATCTCTTGTTCGTGAATTTCATGGTATGAGTAGTCGCCTAGTGAAAGCAATGCCAAGTTTGATATTTACTGCCGTTTTGGAAGACAACTGTACATCAAGAACATGTGCTATATGCCTTGAAGACTATTGTGTTGGCGAGAAGATCAGGATTCTTCCGTGCTGTCACAAGTTTCATGCTGCATGTGTGGATTCTTGGCTTACTTCATGGAGAACCTTTTGTCCAGTTTGCAAGCGTGATGCAAGAACTGGCTTAAGCGATCCACCTCCTTCAGAATCCACACCCTTGCTCTCATCAAGCCCAGCATCTATGGCGTCCTCTGTCTTATCATCTGTGAGATCATCACTAGCTTCATCTTCAGCAATACAAATTGCGCGGACAGCTTCACAGACCGCATCTGTTTCTCGTAACCACTCTATTGCCAGTACACCTTATGTTCATCCATCAACATCACTTAGGTCCTCCTACCATCAATCCCCCTCCCTAAGCATGAGCCGAAGCTCAGTAGATCTTAGGAATGCTTCCCAAAGATCTCTAGCTTCTCACTTGAATTCACCACATTCCATGGGATATCCTTCTTTGCCATCCCTTAACTCAAGGTACATGTCCCCGTATATTCCAAGTCCAAGCAATGCTTCAGTGAGTTATTTGGGTTCATCCAGTCATCAACAACATCCTCTCCGTTATAGTGAGTCGGCTGCAAGCTTCTCACCATTTGCATCGACACACTCCCTTCCGGAATGTTAA 1338 0.441 MGTLNLLLFFSLVSLCAMAAAKVVLIGNNITLSFDDIEANFAPTVKGSGEYGVLYLAEPLDACTDLTNKVERLPNVSSPFALVVRGGCSFEEKVRRAQKAGFQAVIVYDNEEDGVLVAMAGNSAGIRIHAVFVSKASGEILKKYAGWPNVEIWLIPTFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPRASLVREFHGMSSRLVKAMPSLIFTAVLEDNCTSRTCAICLEDYCVGEKIRILPCCHKFHAACVDSWLTSWRTFCPVCKRDARTGLSDPPPSESTPLLSSSPASMASSVLSSVRSSLASSSAIQIARTASQTASVSRNHSIASTPYVHPSTSLRSSYHQSPSLSMSRSSVDLRNASQRSLASHLNSPHSMGYPSLPSLNSRYMSPYIPSPSNASVSYLGSSSHQQHPLRYSESAASFSPFASTHSLPEC* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2057 445 MobiDBLite consensus disorder prediction 342 388 - -
Vra8g2057 445 Pfam Ring finger domain 232 275 IPR001841 -
Vra8g2057 445 Pfam PA domain 74 141 IPR003137 -
Vra8g2057 445 CDD PA_C_RZF_like 19 162 IPR044744 -
Vra8g2057 445 CDD mRING-H2-C3H2C2D_ZSWM2 232 275 - -
Vra8g2057 445 SUPERFAMILY PA domain 75 163 IPR046450 -
Vra8g2057 445 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 374 - -
Vra8g2057 445 ProSiteProfiles Zinc finger RING-type profile. 233 275 IPR001841 -
Vra8g2057 445 SUPERFAMILY RING/U-box 223 287 - -
Vra8g2057 445 SMART ring_2 233 274 IPR001841 -
Vra8g2057 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 280 IPR013083 -
Vra8g2057 445 PANTHER PROTEASE-ASSOCIATED (PA) RING/U-BOX ZINC FINGER PROTEIN 1 374 - -
Vra8g2057 445 Gene3D - 18 154 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2057 20 444 C3H Transcription Factor Family AT1G22670 48.028 2.84e-120 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2057 K15692 - gmx:100791248 730.324