Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2051 ATGTCGAAAGATTGGAGCGCATCAAAGTGCAAAAATGTGTTGCCGCACGAGACCCCGGACGTAAATGAGGATTACATTGTGGGGCAGAAGGTGTTGGGAAAAGGGCGCTTGGCCACCACCTACGTGTGCACCCACAAGGAGACAAGGAAGACTTACGCGTGCAAAACCATCCCAAAGACGAAGCTTTTGTGCCAAGAGGAGTACGATGATGTGTGGAGGGAGGTTCAGATCCTGCACCATTTGTCGGAGCACCCCAACGTGGCAAGGATACAGGGAAGCTACGAGGACAAGTTTGCGGTGCACCTTGTGATGGAGCTGTGTCGTGGGGGTGAGCTTTTCTATAGGATCACTCAGAAGGGGTATTTCAGCGAACGAGAGGCTGCCAAGTTGATGAAGACCATTGTTGGGGTGGTGGAAGTGTGCCACGCTCATGGGGTCATTCATAGGGATCTCAAGCCTGAGAATTTCTTGTTTGATACCCTCGCCACGGATGCCACCCTCAAGGTTATCGATTTTGGTTTCTCTGTCTTCTTTAAACCAGGACAAACCTTTAGTGATATAGTAGGAACTTGCTACTATATGGCCCCGGAGGTGTTGGGCAGACAGTCTGGACCAGAAGTGGACGTTTGGAGTGCTGGTGTTATTCTATACACCTTACTGAGAGGGCTTCCACCTTTCTGGGCAAAATCCGAATCAGGAGTTTTCAAACAGATTTTGCATGCAGAAGTTGATTTTGCATCTCATCCGTGGCCAAGTATATCAGGAAGTGCTAAAGATTTGATAAAACAGATGTTGGATAAGGACCCCAAGAAAAGAATTTCCGCTCATGAAGTCTTGTGTCACCCTTGGATTGTTGATGACAGTGTTGCCCCGGACAAACCTCTGGATCCTGCTGTTTTGACGCGCCTAAAGCATTTCTCAACAATGAATAAACTTAAGAAGATGGCAATACGTGTCATAGTAGAAAGACTTTCGGAGGAGGAAATAGGTGGCTTAAAAGAGATATTTAAAATGATTGACGAAGACAATAGCGGGACAATCACTTTTCAAGAACTCAAAGATGGTTTGAAAAGTGTGGGATGTGATCTCATGGAATCTGAAATTAGATCCCTTATGGATGCGGCTGATATAGACAACAATGGAACAATAGACTATGGTGAATTTCTCGCAGCTACAATGCACTTGAATAAGATGGAAAGAGAAGAGAATTTAGTTGCTGCTTTTTCCTATTTTGATAAAGATGGCAGTGGTTACATCACCATTGATGAGCTTCAACAGGCTTGTAAAGACTTCGGCCTTGGTGAGTTGCATCTGGATGAGATGATCAAAGAGATTGACCAAGACGATGATGGGAGAATTAATTATGGGGAGTTTCAAACAATGATGAGAAGGGGCGAACCAGGTGGTTGTAGAAGCAAAGTCATGAACAGCAATCATAAAACTTCATTATTTCCTGGTTTAGGAGTGAATGACTCATCCTAA 1482 0.448 MSKDWSASKCKNVLPHETPDVNEDYIVGQKVLGKGRLATTYVCTHKETRKTYACKTIPKTKLLCQEEYDDVWREVQILHHLSEHPNVARIQGSYEDKFAVHLVMELCRGGELFYRITQKGYFSEREAAKLMKTIVGVVEVCHAHGVIHRDLKPENFLFDTLATDATLKVIDFGFSVFFKPGQTFSDIVGTCYYMAPEVLGRQSGPEVDVWSAGVILYTLLRGLPPFWAKSESGVFKQILHAEVDFASHPWPSISGSAKDLIKQMLDKDPKKRISAHEVLCHPWIVDDSVAPDKPLDPAVLTRLKHFSTMNKLKKMAIRVIVERLSEEEIGGLKEIFKMIDEDNSGTITFQELKDGLKSVGCDLMESEIRSLMDAADIDNNGTIDYGEFLAATMHLNKMEREENLVAAFSYFDKDGSGYITIDELQQACKDFGLGELHLDEMIKEIDQDDDGRINYGEFQTMMRRGEPGGCRSKVMNSNHKTSLFPGLGVNDSS* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2051 493 CDD EFh 332 391 IPR002048 GO:0005509
Vra8g2051 493 Pfam EF-hand domain pair 402 463 IPR002048 GO:0005509
Vra8g2051 493 Pfam EF-hand domain pair 332 392 IPR002048 GO:0005509
Vra8g2051 493 ProSiteProfiles EF-hand calcium-binding domain profile. 399 434 IPR002048 GO:0005509
Vra8g2051 493 Pfam Protein kinase domain 29 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2051 493 Gene3D - 293 465 - -
Vra8g2051 493 ProSitePatterns EF-hand calcium-binding domain. 340 352 IPR018247 -
Vra8g2051 493 ProSitePatterns EF-hand calcium-binding domain. 446 458 IPR018247 -
Vra8g2051 493 PANTHER SERINE/THREONINE-PROTEIN KINASE 11 476 - -
Vra8g2051 493 ProSitePatterns EF-hand calcium-binding domain. 376 388 IPR018247 -
Vra8g2051 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Vra8g2051 493 PANTHER BNAA09G05220D PROTEIN 11 476 - -
Vra8g2051 493 ProSiteProfiles EF-hand calcium-binding domain profile. 363 398 IPR002048 GO:0005509
Vra8g2051 493 CDD EFh 404 463 IPR002048 GO:0005509
Vra8g2051 493 SMART efh_1 403 431 IPR002048 GO:0005509
Vra8g2051 493 SMART efh_1 367 395 IPR002048 GO:0005509
Vra8g2051 493 SMART efh_1 331 359 IPR002048 GO:0005509
Vra8g2051 493 SMART efh_1 437 465 IPR002048 GO:0005509
Vra8g2051 493 SMART serkin_6 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2051 493 Gene3D Phosphorylase Kinase; domain 1 27 111 - -
Vra8g2051 493 SUPERFAMILY EF-hand 323 463 IPR011992 -
Vra8g2051 493 ProSitePatterns EF-hand calcium-binding domain. 412 424 IPR018247 -
Vra8g2051 493 CDD STKc_CAMK 24 283 - -
Vra8g2051 493 ProSiteProfiles Protein kinase domain profile. 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra8g2051 493 Gene3D Transferase(Phosphotransferase) domain 1 112 292 - -
Vra8g2051 493 ProSiteProfiles EF-hand calcium-binding domain profile. 327 362 IPR002048 GO:0005509
Vra8g2051 493 SUPERFAMILY Protein kinase-like (PK-like) 14 309 IPR011009 -
Vra8g2051 493 ProSiteProfiles EF-hand calcium-binding domain profile. 435 468 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2051 Vra-Chr8 38350690 38356081 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2051 1 493 EF-hand Containing Proteins AT4G09570 68.154 0.0 714
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vra8g2051 Pkinase 9.8e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2051 K13412 - gmx:100811596 827.394