Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2048 ATGACATTAACCCAAATTCCTGAGAGATCATCAGTTGACATGGAATCATGTGTACCTCCAGGATTCAGATTTCATCCAACAGAAGAGGAGCTTGTGGGGTACTATCTCAAGAGGAAGATAAACTCCCTAAAAATCGATCTAGATGTTATTGTTGAGATTGATCTCTACAAAATGGAACCCTGGGACATACAAGATAGGTGCAAGCTAGGATATGAGCAACAGAATGAGTGGTACTTTTTCAGCCATAAAGATAAGAAGTATCCTACAGGAACAAGAACTAACAGGGCCACTGCTGCTGGATTCTGGAAAGCAACTGGAAGGGACAAGGCTGTTATGACCAAAAATAGAATCATAGGGATGAGAAAGACCTTGGTCTTCTACAAGGGACGTGCCCCTAATGGAAGGAAAACGGATTGGATTATGCATGAATATAGGCATCAAACCTCTGAACATGGTCCTCCACAGGAAGAAGGATGGGTTGTGTGCCGAGCATTTCGAAAGCCTAGTCCAAGTCACAGGCAAGGTTATGAGGCATGGTGCAGTAGTAGTAGCCATCAACAACACTTTTACAAAGATCAAAGCTTTGCAAGACCCTTATCAATTGCTGATATTTTGAATGAAACAAATGTGCCTCATCACCCTGCAGAAGCTCCAAGCTTTAGTCTTCCTTTCAACTCAGATCAGCAACACTTTATTCTGCCAAACCAAACTGTCATGGAGAAACAGCTGATTGAGCTTCCTCAGCTAGATAGTCCAACTGCAAGTTTTGCAATGAAGGACTGTAACCAACAACACCAGAATGGCCTCACAAATGAGGAATATTGTAGTGATGAAAGGAGCAATAGCAGTGCGCAAGGTATCGATTGGAAGAGTTTGGACAACTTGTTCGGGGCACAATTGACTGACACAGCTTATTTTTCACATCCAAACTTGCCCTATAATAACCATGATCAAGCTAGTCATATCCTAGGATGCTTCCCTGATTCATAG 990 0.4242 MTLTQIPERSSVDMESCVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIVEIDLYKMEPWDIQDRCKLGYEQQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVMTKNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQEEGWVVCRAFRKPSPSHRQGYEAWCSSSSHQQHFYKDQSFARPLSIADILNETNVPHHPAEAPSFSLPFNSDQQHFILPNQTVMEKQLIELPQLDSPTASFAMKDCNQQHQNGLTNEEYCSDERSNSSAQGIDWKSLDNLFGAQLTDTAYFSHPNLPYNNHDQASHILGCFPDS* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2048 329 Gene3D NAC domain 27 170 IPR036093 GO:0003677|GO:0006355
Vra8g2048 329 PANTHER NAC DOMAIN-CONTAINING PROTEIN 30 16 314 - -
Vra8g2048 329 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 16 314 - -
Vra8g2048 329 SUPERFAMILY NAC domain 14 167 IPR036093 GO:0003677|GO:0006355
Vra8g2048 329 ProSiteProfiles NAC domain profile. 18 167 IPR003441 GO:0003677|GO:0006355
Vra8g2048 329 Pfam No apical meristem (NAM) protein 19 145 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2048 Vra-Chr8 38329732 38334274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2048 14 329 NAC Transcription Factor Family AT1G71930 55.325 3.48e-114 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra8g2048 NAM 7.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2048 - - var:108325420 662.529