Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2042 ATGAATCCAAAAGGAGGCTTATGTGCTAATAACTGCAAAACGTCCTCAGAACCCCCCTCTTTCTATGGTTTCGGAATTGAATCACCTTTCGATGAATTCAACCCTCCCTCTCTTCCAATCCAATCTGTACTTCCAGGTCAATCTAACACGGATGTTGAGATCCCTGACCAAGAAAACTGTCCACTAAGTGACTCATCAAATACCAGCAAGCTCCAAGATTGGAATCCAGGTGCTATGCTGAACAATCTTTCGTTCCTTGAAGAAAAGATTCATCAGCTCCGGGATCTAGTGCATTTAATTGTCAATAAAAAGTGCCAACCCTTTGGGCAATCTCATGAACTAGTGACTCAGGAACAGCAGCTCGTCACAGCTGATCTTACATCAATTATTGTTCAATTGATCTCAACTGCTGGTAGTCTTCTCCCCTCTGTTAGGCACACCCTCACTACAAATCCCTTGGTTGGCCAGATTGACCAGCTTCATGAGATTAACCTCCCTTTTGGATCAGAACCAAGTAGTGGCATTAACCCACAAAATAACTGTGGAAATAAGTCCACTCCAAATGATCTACCAAATACTTGTGAAATGGAGCAAAACTATAACATGGAAGAACACGAGCCAAAAGATGAAGAAGATGTGGATGAGGGAGAGAGTCTTCCACCCGGTTCCTATGAGATTTTACAGTTGGAAAAAGAAGAAATTCTTGCCCCTCACACACATTTCTGTACAATATGTGGGAAAGGATTCAAGAGGGACGCAAATCTCCGAATGCACATGCGTGGCCATGGTGATGAGTACAAAACCCCTGCAGCTCTTGCAAAACCGCATAAAGAAACCGGGTCTGAACCGAAGCTTATCAAGAGGTATTCTTGCCCCTATGCCGGCTGCAAGCGTAACAAGGATCACAAGAAATTCCAACCACTAAAGACTATTTTGTGTGTCAAAAACCACTACAAGAGAACGCACTGTGACAAGAGCTATACTTGCAGCAGATGCAACACCAAGAAGTTTTCAGTCATGGCAGACCTTAAAACTCATGAAAAACACTGTGGCAAGGATAAATGGCTCTGTTCTTGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATTGCTCTTTTCCAAGGCCATACACCGGCTATTCCTTTGGATGACACCAAAGCAGTGGCGGAGCCACCTGATCCCCAGAACCAAGAATGCAGCAATAAGGTAGGAAGTATGAACTTCTGTTATGGATCAAAGCCTTCAAGTGAAAATGTAGTTCAAAACATGATGGATATGAAAGGTAATATTGATGATCCTGTGAATTATTTCTCATCGCTGAACTTCGAAGGCTGTAACTTTGGGGCGTTTAGTGAATTCCCTCAAACTCCATTTGAAGATTCAGAAGGTTCTTTCTCTTTTCTGATGTCAGGATCCTTTAATTATGCTCCTAAATTTGGTGGCGGTGAATCAAGTTCCGACAATCTGTTGTGA 1482 0.4271 MNPKGGLCANNCKTSSEPPSFYGFGIESPFDEFNPPSLPIQSVLPGQSNTDVEIPDQENCPLSDSSNTSKLQDWNPGAMLNNLSFLEEKIHQLRDLVHLIVNKKCQPFGQSHELVTQEQQLVTADLTSIIVQLISTAGSLLPSVRHTLTTNPLVGQIDQLHEINLPFGSEPSSGINPQNNCGNKSTPNDLPNTCEMEQNYNMEEHEPKDEEDVDEGESLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDTKAVAEPPDPQNQECSNKVGSMNFCYGSKPSSENVVQNMMDMKGNIDDPVNYFSSLNFEGCNFGAFSEFPQTPFEDSEGSFSFLMSGSFNYAPKFGGGESSSDNLL* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2042 493 MobiDBLite consensus disorder prediction 169 194 - -
Vra8g2042 493 ProSiteProfiles Zinc finger C2H2 type domain profile. 240 267 IPR013087 -
Vra8g2042 493 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 26 475 - -
Vra8g2042 493 Gene3D Classic Zinc Finger 224 294 - -
Vra8g2042 493 SUPERFAMILY beta-beta-alpha zinc fingers 238 265 IPR036236 -
Vra8g2042 493 MobiDBLite consensus disorder prediction 168 194 - -
Vra8g2042 493 ProSitePatterns Zinc finger C2H2 type domain signature. 242 262 IPR013087 -
Vra8g2042 493 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 26 475 IPR044300 GO:0010044|GO:0010447
Vra8g2042 493 SMART c2h2final6 327 349 IPR013087 -
Vra8g2042 493 SMART c2h2final6 240 262 IPR013087 -
Vra8g2042 493 SMART c2h2final6 289 322 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2042 Vra-Chr8 38262204 38265066 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2042 208 493 C2H2 Transcription Factor Family AT1G34370 68.836 3.73e-138 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra8g2042 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2042 - - gmx:100801536 895.19