Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2040 ATGGAAGATTCAGAGGAGGATGAGCTTTTGAACCTTAGCCTTTCAGTTGCTGCGGATAGGGAAAGGAAAAAGAAGGGAAAGATAATTAGGGAACATAACGTCTCTATGAGTAGTACTACTGCTAGGAAATCCTATGAAAGCTATGAAGGGAAGATATTTAGGCTTCTCCAAATGAGGGAGCAGATGCTAAGACAAGACCATAGGAGAAAAGGAGTTGTAGAAGATGGGAATGGCCTCCCCTTGATCCATTTGCTGCTCTCAACAGCAACTGCTGTTGATGACAACAACTTGGATTCATCCTTAGAGAATCTCACTGATTTGTACCAAACTGTTTCCCTAACAGGTGATTCGGTTCAGCGTGTGGTGGCTTATTTTGCTGATGGTTTGGCCGCAAGGCTTCTCACAAGGAAATCCCCATTCTACGACATGCTCATGGAGGAACCAACGACTGAGGAAGAGTTAAATGCATTCACAGATCTCTACAGGGTTTCACCTTACTACCAATTCGCTCATTTCACTGCAAACCAAGCTATCTTGGAGGCCTTTGAGAAAGAAGAAGAGAGGAACAACCGCGCTTTGCATGTCATTGACTTTGATGTCTCCTATGGCTTCCAATGGCCCTCTCTCATTCAGTCTCTCTCGGAGAAGGCAACTACCGGCAACCGCATATCCCTCAGGATAACCGGATTCGGGAAGAATCTCAAAGAGCTTCAAGAAACTGAGTCTAGATTGGTTAGTTTCTCAAAGGGTTTTGTCAGTCTTGTGTTTGAATTCCAAGGGCTGCTAAGAGGCTCAAGGGTCATCAACCTAAGGAAGAAAAAGAATGAAACGGTGGCTGTCAACTTGGTTTCTTATTTGAACACTTTGAGTTGTTTTATGAAGATCTCTGACACATTGGGATTTGTTCATTCCCTTAATCCCTCCATTGTTGTGGTGGTGGAGCAAGAGGGCAGCAGGAGTCCTAGGAGCTTCTTGTCAAGGTTCACAGACTCCTTGCACTACTTTGCAGCCATGTTTGATTCACTGGATGATTGTCTCCCACTAGAGAGTGCTGAGAGGTTGAGAATTGAGAAGAAGCTTCTGGGGAAAGAGATCAAAAGCATGCTCAACAATGATGTGGATGGTGTGGATTGTCCAAAGTATGAAAGGATGGAAACATGGAAAGCAAGAATGGAGAATCATGGGTTTGTTGCCACCAAAATAAGCTCAAAGTCTATGATCCAAGCAAAACTGTTGCTGAAGATGAGGACCCATTATTGTCCTCTTCAGTTTGAGGAAGAAGGAGGTGGGGGTTTCAGGGTTTCCGAAAGAGATGAAGGAAGGGCTATCTCTTTAGGGTGGCAAAATAGGTTTCTGCTCACAGTCTCAGCATGGCAATCAGTCTGA 1386 0.4444 MEDSEEDELLNLSLSVAADRERKKKGKIIREHNVSMSSTTARKSYESYEGKIFRLLQMREQMLRQDHRRKGVVEDGNGLPLIHLLLSTATAVDDNNLDSSLENLTDLYQTVSLTGDSVQRVVAYFADGLAARLLTRKSPFYDMLMEEPTTEEELNAFTDLYRVSPYYQFAHFTANQAILEAFEKEEERNNRALHVIDFDVSYGFQWPSLIQSLSEKATTGNRISLRITGFGKNLKELQETESRLVSFSKGFVSLVFEFQGLLRGSRVINLRKKKNETVAVNLVSYLNTLSCFMKISDTLGFVHSLNPSIVVVVEQEGSRSPRSFLSRFTDSLHYFAAMFDSLDDCLPLESAERLRIEKKLLGKEIKSMLNNDVDGVDCPKYERMETWKARMENHGFVATKISSKSMIQAKLLLKMRTHYCPLQFEEEGGGGFRVSERDEGRAISLGWQNRFLLTVSAWQSV* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2040 461 Pfam GRAS domain family 81 459 IPR005202 -
Vra8g2040 461 PANTHER OSJNBA0084A10.13 PROTEIN 8 459 - -
Vra8g2040 461 Coils Coil 351 371 - -
Vra8g2040 461 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 8 459 IPR005202 -
Vra8g2040 461 ProSiteProfiles GRAS family profile. 72 459 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2040 Vra-Chr8 38244965 38248641 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2040 77 459 GRAS Transcription Factor Family AT1G14920 34.091 1.44e-55 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra8g2040 GRAS 1.6e-91 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2040 - - gmx:100809458 832.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g1432 1 21830673 21832572 Vra8g2040 8 38244965 38248641 PCT