Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2038 ATGGGAGAATCCACTGTTGTTAGCACCAATAACCTCTTTACAACTTGTCCCAAAAAATGTGATGAAGGTGCTCGTCTATCTGCAATGTTGCTTAGTACTACTGTGGTGTACCCTGCAGTCCTGAATGCTGCCATTGAGCTCAACCTGTTTGAGATCATAGCCAAGGGAACACCACACGGTTCATTCATGTCATCTCATGAAATTGCTTCTAAGCTCCCAAACCAGCACCCTGACTTGCCCAATAGGCTTGATCGCATGCTGCGTTTGCTTGCTAGTTATTCTGTTCTTACCAGTTCTACACGCACCACACAACACGGTGCCACTGAGACAGTTTANGGNCTCTCACAAATTGGACAATACTATGCCCCTGATGCAACTAGAGGCTACTTCGCTTCTTTTGCATCCTTTCTCTCTTGTCCTGCACTCTCACCACTTTGGCTGAATTTCAAGGAAGCNGTGGTTGATGCAGACGTTGATTTGTTCAAGAAACTTCATGGNGTAACAACGTACCAGTACATGGAAAAGAATCCAAAAATGAANGAAATTTTTAACAAGTCTATGGCGGANNTGTGCGTAACAGATATGAATAGAATACTTGACATATATANTGGATTTGAGGGAATATCAACGTTGGTTGATGTNGGAGGTGGAAATGGACAAAACCTGAAAATGATAGTCTCCAAATACCCTTCAATTAAAGGAATTAATTTTGATCTGCCCCAAGTCATTGAGAATGCACCACTGCTATCAGGGGTTGAGCATGTTGGAGGAGATATGTTTGCAAGAGTTCCAGAAGGTGACGCCATGACACTAAAGGCTGTGTTGCACAATTGGTCTGATGAGAAGTGCGTAGAAATTTTGAGCAATTGTCGCAAAGCACTGTCTAGAGATGGGAAGGTGGTTGTTCTGGAGTTCATAATGCCAGAAAAACCAGAAGCAACTGAACAATCTCAGCTTGTTTCGAGCCTGGACAACCTTATGTTTATCACAGCTGGTGGAAAGGAAAGAACTGAGAAAGAGTACGAGAATTTGTGCAAGCTCGCTGGTTTCTCAAAATTTAATGTTGCTTGTCATGCGTCGTCTGGGCCGGGAGTGATGGAATTCTACAAATAG 1113 0.4286 MGESTVVSTNNLFTTCPKKCDEGARLSAMLLSTTVVYPAVLNAAIELNLFEIIAKGTPHGSFMSSHEIASKLPNQHPDLPNRLDRMLRLLASYSVLTSSTRTTQHGATETVXGLSQIGQYYAPDATRGYFASFASFLSCPALSPLWLNFKEAVVDADVDLFKKLHGVTTYQYMEKNPKMXEIFNKSMAXXCVTDMNRILDIYXGFEGISTLVDVGGGNGQNLKMIVSKYPSIKGINFDLPQVIENAPLLSGVEHVGGDMFARVPEGDAMTLKAVLHNWSDEKCVEILSNCRKALSRDGKVVVLEFIMPEKPEATEQSQLVSSLDNLMFITAGGKERTEKEYENLCKLAGFSKFNVACHASSGPGVMEFYK* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2038 370 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 370 IPR016461 GO:0008168
Vra8g2038 370 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 136 358 IPR029063 -
Vra8g2038 370 PIRSF O-mtase 7 370 IPR016461 GO:0008168
Vra8g2038 370 PANTHER O-METHYLTRANSFERASE 1 370 IPR016461 GO:0008168
Vra8g2038 370 Pfam O-methyltransferase domain 146 351 IPR001077 GO:0008171
Vra8g2038 370 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 370 - -
Vra8g2038 370 Pfam Dimerisation domain 40 91 IPR012967 GO:0046983
Vra8g2038 370 SUPERFAMILY "Winged helix" DNA-binding domain 22 124 IPR036390 -
Vra8g2038 370 Gene3D - 5 121 IPR036388 -
Vra8g2038 370 Gene3D Vaccinia Virus protein VP39 123 370 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2038 Vra-Chr8 38212850 38214650 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2038 21 359 Monolignol Biosynthesis Gene Families AT5G54160 45.882 9.34e-103 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2038 - - gmx:100798347 572.007