Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2028 ATGTACTACAAACTCAAAACCACCACCACAACAGCTTCTTCACCAATCCCAATCCATCTTCCCACTATGCTCTCAAACTCTCCGCCATCTTCATCTTCTTCACCTCCCTCACACTCTCCCACACCTTTCCCTTCACCCTCTCAGGGATCTCCAGCTCCTGCTCCGCCTTCTCCGCCGCCGCCTGTGGTCGTTAGCCCCTGTGCTGCCTGCAAGATTCTCCGCCGCAGGTGCGTCGAGAAGTGTGTCCTGGCTCCCTATTTCCCTCCCACCGATCCCCTCAAATTCACCATTGCTCACAGAGTCTTTGGAGCCAGCAACATCATCAAGTTCTTGCAGGAGTTACCAGAGTCCCAGAGAGCAGATGCTGTGAGCAGCATGGTCTATGAGGCAAATGCTAGGATCAGAGACCCAGTTTATGGATGTGCAGGAGCAATATGCCAACTTCAGAAGCAAGTGAGCGAGCTTCAAGCACAGTTGGCGAAAGCACAGGCTGAGGTAGTGAACATGCAGTGCCAACAAGCGAATTTGGTGGCTCTAATCTGCATGGAAATGAGTGAATCGCAGGAGCAGCACATGGTGCAGCCTCAAGCTCACATTGACATGAGCTGCTTCATAGAGGACAACAGTTTTGGAAGTGCTTGGGAGCCTCTTTGGACATGA 660 0.5212 MYYKLKTTTTTASSPIPIHLPTMLSNSPPSSSSSPPSHSPTPFPSPSQGSPAPAPPSPPPPVVVSPCAACKILRRRCVEKCVLAPYFPPTDPLKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAEVVNMQCQQANLVALICMEMSESQEQHMVQPQAHIDMSCFIEDNSFGSAWEPLWT* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2028 219 Coils Coil 145 172 - -
Vra8g2028 219 Pfam Lateral organ boundaries (LOB) domain 66 163 IPR004883 -
Vra8g2028 219 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1-LIKE 52 210 - -
Vra8g2028 219 MobiDBLite consensus disorder prediction 1 58 - -
Vra8g2028 219 MobiDBLite consensus disorder prediction 33 58 - -
Vra8g2028 219 MobiDBLite consensus disorder prediction 1 32 - -
Vra8g2028 219 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 52 210 - -
Vra8g2028 219 ProSiteProfiles LOB domain profile. 65 166 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2028 Vra-Chr8 38110000 38111583 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2028 62 219 AS2 family AT1G07900 71.166 2.10e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra8g2028 LOB 2.7e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2028 - - vra:106771364 346.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2028 8 38110000 38111583 Vra8g2028 8 38110000 38111583 ECH