Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2025 ATGGGGAGGAAAGGGTGGTTTTATTCAGTGAAGAAAGTTTTCTTTTCTGATTCCAAAAAGGAACAGAAACATTCTTCTCATCATCAGCAACAACATCATCCTAAACCACCAAAGTTAGGATGTTTTGGGGCTTATCACCCCGATGATCTAGAAGGAGCACCAATTGCTGTTGTTCCCTCACTTCCACCAAGAAAAGACACCACACCAAGAAGTTTGCCAGAGAATGAACAGAATAACCAGGCCTTTTCTTTGGTTTTGGCTACTGCCGTGGCTGCAGGGGCTGCTGTAGCCGCTGCTGCAGAGGTTTCTCGTCCCTCAACCACGAGTCGTCAAAATGTAAAATTGAATGATGACATGGCTGCTACCACGATTCAAACAGCCTATCGTGGATATTTGGCAAGAAGATCCTTGCGAGGCCTGAGAGGTTTGGCGAGGTTGAGAACATTGGTGCAAGGGCAATCTGTTCAAAGGCAAGCAGCTACTACCTTGCAATGCATGCAAACTCTTTCACGGTTGCAGTCTCAGATTCGTGCAAGGAAGGTCAGAATGTCTGAGGAGAATCAGACTCTTAACCGGCAACTGCTGCAGAAACGTGAAAAGGAATTGGACAAGTTGCAAGCTAACCAAATTGGAGAAAAATGGGACGATAGCTCGAAATCAAAGGAGCAAGTTGAGGCACAGGTGTTGAACAGGCAGATAGCAGCTATGAGAAGACAGAAGGCCTTGGCATATGCATCAACACATCAGCAAACACGGAAGAACTCTTCAAAATCTGCCACAAATGCTACATTTATGGATCCAAACAATCCCCACTGGGGCTGGAACTGGCTAGAGCGATGGATGGCTACTAGGCCATGGGAAGATCAAAACACTACCTACCACATTGGTCATGCATCTGCTAAGAGTGGTGCAAAAAACACCATGTCAGTTGGTGAAATCACAAAATTATACTCTCTCCGGGACCAGAACAATGATGTCAAAACACCCCCAGAAAACCAAAAACCAAAATCCCCTTCAAAAAGAGACCCAAGGGTCTCGCTAGCCAATGTAACAAGGCCAAAGGTATCAAGTGGTTCATGGGGTGGTGAAGGTGATTCAAAATCCATGTTTTACAAAGTCCATGAAAACAATCGCAGGCACAGCATTGGAGTGTCACCACTGAATGATGACGAGATCCCTTCAAGCTCTTCACCTGCTTTTCCAAGTCACACAACACCATCCACCCAGGTTGCAAAGGCCAAGCCATCATCCAAAGGGAGAAGTTCATCATTTGCTGCACAAAGAAATACAACACCCGAAAAAACAGCTTCTGCTCCTTTAAAGAAGAGACTCTCTTTCCCTTCTTCTCCAGCCGGTGCAAGAAGGTATTCTGTTTCAACCAGACCTGGAAATGTGGCTTCCAACAAGAGTGTTGCTAATGGTTCCTCCCCTGAAGAGAAAATGAGAGTGAGAAGGTAG 1458 0.4568 MGRKGWFYSVKKVFFSDSKKEQKHSSHHQQQHHPKPPKLGCFGAYHPDDLEGAPIAVVPSLPPRKDTTPRSLPENEQNNQAFSLVLATAVAAGAAVAAAAEVSRPSTTSRQNVKLNDDMAATTIQTAYRGYLARRSLRGLRGLARLRTLVQGQSVQRQAATTLQCMQTLSRLQSQIRARKVRMSEENQTLNRQLLQKREKELDKLQANQIGEKWDDSSKSKEQVEAQVLNRQIAAMRRQKALAYASTHQQTRKNSSKSATNATFMDPNNPHWGWNWLERWMATRPWEDQNTTYHIGHASAKSGAKNTMSVGEITKLYSLRDQNNDVKTPPENQKPKSPSKRDPRVSLANVTRPKVSSGSWGGEGDSKSMFYKVHENNRRHSIGVSPLNDDEIPSSSSPAFPSHTTPSTQVAKAKPSSKGRSSSFAAQRNTTPEKTASAPLKKRLSFPSSPAGARRYSVSTRPGNVASNKSVANGSSPEEKMRVRR* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2025 485 MobiDBLite consensus disorder prediction 381 485 - -
Vra8g2025 485 MobiDBLite consensus disorder prediction 241 267 - -
Vra8g2025 485 MobiDBLite consensus disorder prediction 18 45 - -
Vra8g2025 485 Gene3D iswi atpase 114 141 - -
Vra8g2025 485 PANTHER IQ-DOMAIN 5-RELATED 3 473 - -
Vra8g2025 485 MobiDBLite consensus disorder prediction 317 333 - -
Vra8g2025 485 MobiDBLite consensus disorder prediction 243 267 - -
Vra8g2025 485 SMART iq_5 116 138 IPR000048 GO:0005515
Vra8g2025 485 Coils Coil 219 239 - -
Vra8g2025 485 MobiDBLite consensus disorder prediction 452 475 - -
Vra8g2025 485 MobiDBLite consensus disorder prediction 56 75 - -
Vra8g2025 485 Pfam IQ calmodulin-binding motif 119 138 IPR000048 GO:0005515
Vra8g2025 485 ProSiteProfiles IQ motif profile. 117 145 IPR000048 GO:0005515
Vra8g2025 485 MobiDBLite consensus disorder prediction 388 436 - -
Vra8g2025 485 MobiDBLite consensus disorder prediction 317 366 - -
Vra8g2025 485 Coils Coil 180 200 - -
Vra8g2025 485 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 3 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2025 Vra-Chr8 38079221 38082410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2025 1 475 IQD Protein Family AT5G03040 39.796 4.21e-88 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2025 - - vun:114190307 699.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2025 8 38079221 38082410 Vra8g2025 8 38079221 38082410 ECH