Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2023 ATGGGTAAAGAGAAGGTTCATATTAACATTGTGGTGATTGGCCATGTGGACTCTGGAAAGTCAACTACCACCGGTCACCTCATTTACAAGCTTGGAGGTATTGACAAGCGTGTGATTGAGAGATTCGAGAAAGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCCTGGAACGGAGATGCTGGTTTTGTGAAGATGATTCCCACAAAGCCCATGGTGGTTGAAACCTTCTCTGAATATCCTCCACTTGGTCGTTTTGCTGTGAGAGACATGCGTCAGACTGTGGCTGTTGGTGTCATCAAGAGCGTGGAGAAGAAGGACCCTACTGGAGCTAAGGTTACCAAGGCTGCGCAGAAGAAGAAGTAA 369 0.4661 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKAAQKKK* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2023 122 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 38 IPR027417 -
Vra8g2023 122 PANTHER ELONGATION FACTOR 1-ALPHA 59 121 - -
Vra8g2023 122 PANTHER ELONGATION FACTOR 1-ALPHA 1 58 - -
Vra8g2023 122 PANTHER TRANSLATION FACTOR 1 58 - -
Vra8g2023 122 PANTHER TRANSLATION FACTOR 59 121 - -
Vra8g2023 122 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 39 104 IPR009001 -
Vra8g2023 122 Pfam Elongation factor Tu GTP binding domain 6 43 IPR000795 GO:0003924|GO:0005525
Vra8g2023 122 Pfam Elongation factor Tu C-terminal domain 40 104 IPR004160 -
Vra8g2023 122 Gene3D Translation factors 33 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2023 Vra-Chr8 38066867 38068358 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2023 1 58 Eukaryotic Initiation Factors Gene Family AT1G07930 98.276 1.85e-34 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2023 K03231 - vra:106770620 237.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2023 8 38066867 38068358 Vra8g2023 8 38066867 38068358 ECH
Vra8g2023 8 38066867 38068358 Vra1g1117 1 13814581 13817366 PCT