Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2015 ATGACGGGTTATTCTTCAAGATTCTATCTTGTTTTGCTTTGGTCAATTTGTGGAGTGGTTTCTTTGGCTTCCCCCATTGAAGATCAGAAGAGAGATAGAATTACCCAGCTGCCAGGACAGCCAAAGAATGTGGGGTTTGCTCAGTATTCTGGCTATGTGACTGTGAATGAGCAAAGCGGGAGAGCACTGTTTTACTGGTTGGTGGAGGCACCAGTGAGTCGTGGGCCAAAGTCAAGGCCACTAGTTTTGTGGCTCAATGGTGGCCCCGGTTGTTCCTCTATTGCTTATGGTGCATCTGAAGAAATTGGTCCTTTTCACATTAGGCCTGATGGAAGGTCGCTTTACTCTAACCCTTATGCTTGGAACAAGTTGGCAAATATACTGTTTCTCGATTCCCCTGCTGGTGTTGGTTTTTCATATTCGAATAAAACAACAGATCTGTATACATTTGGTGACCAGAAAACAGCTGAAGATGCATATACTTTTCTTGTTAATTGGTTTGAAAGATTTCCTCAGTATAAGCACAGAGAATTCTACATTGCTGGAGAGAGTTATGCAGGTCACTACGTTCCTCAGTTGGGTCAAATTGTTTACCAGAAAAATAAGGGAATCCAGAATCCAGTCATAAATTTTAAGGGATTTATGGTTGGTAATGCCGTTACTGATGATTATCATGATTATATTGGCACATTTGAATATTGGTGGACCCATGGTTTGGTTTCGGATTCCACGTATAGGATGCTAAAAGTTGCCTGCAATTTTGGGTCCTCTCAGCATCCATCAGTGCAATGCATGCAGGCTCTGAGAGTTGCAAATATGGAGCAGGGAAACATTGATCCATACAGCGTTTATACTCAGCCTTGTAACAACACAGCATCACTCAGACGCGGCTTGAAGGGTCGCTATCCATGGATGTCTCGAGCATATGATCCCTGTACTGAAAGGTATTCTGATTTGTATTTCAACCGTCCAGAAGTTCAGAAGGCATTTCATGCCAATGTAACTGGGATTCCTTATGCATGGAAAGCATGCGGTGATATTGTTGGGAACTATTGGACTGATTCTCCATTATCTATGCTTCCTATATATCAAGAACTTATCCCTGCTGGTGTCCGAATATGGGTTTACAGTGGAGACACTGATGCCGTGGTTCCAGTGACTGCTACTCGATATTCAATTGATGCCTTGAAGCTACCTACCATCATCAATTGGTACCCTTGGTATGACAGTGGCAAGGTTGGTGGTTGGAGTCAAGTTTATAAAGGGTTGACAATGGTTACAGTAAGAGGTGCTGGACACGAGGTTCCTCTTCATAGGCCCCGACAAGCATTCATTCTTTTTAGTTCATTCTTGCAGAACAAGTCGATGCCAACTACAAGTTAG 1383 0.4302 MTGYSSRFYLVLLWSICGVVSLASPIEDQKRDRITQLPGQPKNVGFAQYSGYVTVNEQSGRALFYWLVEAPVSRGPKSRPLVLWLNGGPGCSSIAYGASEEIGPFHIRPDGRSLYSNPYAWNKLANILFLDSPAGVGFSYSNKTTDLYTFGDQKTAEDAYTFLVNWFERFPQYKHREFYIAGESYAGHYVPQLGQIVYQKNKGIQNPVINFKGFMVGNAVTDDYHDYIGTFEYWWTHGLVSDSTYRMLKVACNFGSSQHPSVQCMQALRVANMEQGNIDPYSVYTQPCNNTASLRRGLKGRYPWMSRAYDPCTERYSDLYFNRPEVQKAFHANVTGIPYAWKACGDIVGNYWTDSPLSMLPIYQELIPAGVRIWVYSGDTDAVVPVTATRYSIDALKLPTIINWYPWYDSGKVGGWSQVYKGLTMVTVRGAGHEVPLHRPRQAFILFSSFLQNKSMPTTS* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2015 460 Gene3D - 359 453 - -
Vra8g2015 460 ProSitePatterns Serine carboxypeptidases, histidine active site. 423 440 IPR033124 GO:0004185
Vra8g2015 460 ProSitePatterns Serine carboxypeptidases, serine active site. 180 187 IPR018202 GO:0004185
Vra8g2015 460 Gene3D - 312 348 - -
Vra8g2015 460 SUPERFAMILY alpha/beta-Hydrolases 29 457 IPR029058 -
Vra8g2015 460 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 21 458 IPR001563 GO:0004185|GO:0006508
Vra8g2015 460 PANTHER CARBOXYPEPTIDASE 21 458 - -
Vra8g2015 460 Pfam Serine carboxypeptidase 38 453 IPR001563 GO:0004185|GO:0006508
Vra8g2015 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 129 IPR001563 GO:0004185|GO:0006508
Vra8g2015 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 140 IPR001563 GO:0004185|GO:0006508
Vra8g2015 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 166 191 IPR001563 GO:0004185|GO:0006508
Vra8g2015 460 PRINTS Carboxypeptidase C serine protease (S10) family signature 423 436 IPR001563 GO:0004185|GO:0006508
Vra8g2015 460 Gene3D alpha/beta hydrolase 28 290 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2015 Vra-Chr8 37976439 37980204 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2015 341 456 Calmodulin-binding Proteins AT2G22960 29.060 2.81e-12 63.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2015 8 37976439 37980204 Vra8g2015 8 37976439 37980204 ECH