Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2002 ATGTTCAAGGTTATGGAAAACATGGAGAGGGGTTCAGAAAGGTGTTTAGATTCTCAACTTTGGCATGCCTGTGCTGGTGCCATGGTTCAAATGCCACCTCTTAACACAAAAGTCTTCTACTTTCCCCAGGGCCACGCGGAACACGCTAATGGGAAAGTAGATTTTGGCCAAACCAGGGTTCCACCACTCGTCCCTTGCAGACTCTCTGCCATGAAATACATGGCAGACCCTGACACAGATGAGGTGTATGTCAAAATGAGGCTGATCCCTTTGAGGGAACATGAATTGGATTTGGAGGATGATTGTTTCTTGGGGAACACTGTGGAGGGTCAAGAGAAACCTCCTACCTCTTTTGCCAAGACACTCACACAATCTGATGCCAACAATGGTGGAGGGTTTTCTGTGCCTCGTTACTGTGCAGAAACCATCTTCCCGAGGTTGGACTATTCAGCTGAGCCTCCAGTTCAGACAATCATCGCCAAGGATATGCATGGACAGTGCTGGAAGTTTAGGCATATCTATAGAGGGACGCCTAGGAGGCATCTTTTGACCACTGGATGGAGCAATTTTGTGAATCAGAAGAGGCTTGTTGCTGGGGACTCCATTGTGTTTCTGAGGGCAGAAAACGGAGATCTTTGTGTTGGGATAAGGAGGGCTAAGAAGGGGATTGGTGGAGGGTCTGAGTTCTCTTCCGGATGGAACCCTCTCTTTGGTGGGGGTTCTGGATTCTTGTGTGGGAGTGAGAGCAACTTGGTGGGTGGTGTAAAAGGCGGTGGTGACGAGATGGTAGGAAGAGTGGCTGCTGAATCTGTTGTTGAGGCCGTAGCTTGTGCTGTTAATGGTAGGCCCTTCGAGGTTGTGTACTATCCAAGAGCTAGTTCCCCTGAGTTTTGTGTTAAGGCTTCTGTTGTGAAGGCTGCGATGCAAATTCAGTGGTGTTCTGGGATGAGATTCAAAATGCCCTTTGAAACTGAGGATTCTTCTAGGATTAGCTGGTTCATGGGCACCATTTCTTCTGTTCAGGTTGCAGATCCCATTCGTTGGCCTGATTCTCCTTGGCGTCTTCTGCAGGTGGTATGGGATGAACCGGATTTACTACAGAATGTGAAGTGTGTAAACCCTTGGCTGGTTGAACTAGTCTCTAACATGCCCACCTTCAATCTCTCTGCATACTCACCTCCTAGAAAGAAACAACGCTTCCTACATGACCCATATTTTCAAGTCATCAACCAACTCCCAATGCCATCATTCTCTAGCAATCTTCTGAATTATACCAACTCTCTTTGTAACATTGAAAATAGTAGTTCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGACTATCTCCATCTGATTTTCCCTTCAACAAGCTCCCAACAGACATGCTTCTAGGTGGGTTCTCTAGGCTCGACCATGCAACAAAACCTGTTAGGCCTCCTTGCGGAACCTATAAGAACAGCACTTCTAATACTAGTACTAAGACCAATGTTGACATATCTTGCCTGTTGACTGTGGGAAATCCCATCCCGAATTTTAAGGAATCGAATGCAACAAAAGCACCCCACATCTTGTTATTTGGAAAACTTATTCACACTGAGCAAAAGAGTTCAAACACCAGCTCTGCAAGTACAACTGGGAATAGTGTGTCTGAGGGGAATTCACTCAAGACATCTAATGCTTCTGATGGCCTAGGTTCTGCTGTGCACCAAAATAGCCCAATTGAGAATAATTCTGATGGAGGGTCTCCCTGGTACAAGGATCAGCACAAGGCTGATCTGGGATCCGACAACGTTAACACGTTATGCATTGCTTTGTAA 1821 0.4651 MFKVMENMERGSERCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHANGKVDFGQTRVPPLVPCRLSAMKYMADPDTDEVYVKMRLIPLREHELDLEDDCFLGNTVEGQEKPPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKRLVAGDSIVFLRAENGDLCVGIRRAKKGIGGGSEFSSGWNPLFGGGSGFLCGSESNLVGGVKGGGDEMVGRVAAESVVEAVACAVNGRPFEVVYYPRASSPEFCVKASVVKAAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNMPTFNLSAYSPPRKKQRFLHDPYFQVINQLPMPSFSSNLLNYTNSLCNIENSSSAGIQGARHAQFGLSPSDFPFNKLPTDMLLGGFSRLDHATKPVRPPCGTYKNSTSNTSTKTNVDISCLLTVGNPIPNFKESNATKAPHILLFGKLIHTEQKSSNTSSASTTGNSVSEGNSLKTSNASDGLGSAVHQNSPIENNSDGGSPWYKDQHKADLGSDNVNTLCIAL* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2002 606 SMART B3_2 118 220 IPR003340 GO:0003677
Vra8g2002 606 CDD B3_DNA 117 218 IPR003340 GO:0003677
Vra8g2002 606 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Vra8g2002 606 Gene3D - 312 385 - -
Vra8g2002 606 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 577 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vra8g2002 606 Gene3D - 116 220 IPR015300 -
Vra8g2002 606 Pfam Auxin response factor 275 357 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vra8g2002 606 MobiDBLite consensus disorder prediction 537 591 - -
Vra8g2002 606 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Vra8g2002 606 PANTHER AUXIN RESPONSE FACTOR 16 9 577 - -
Vra8g2002 606 MobiDBLite consensus disorder prediction 537 584 - -
Vra8g2002 606 SUPERFAMILY DNA-binding pseudobarrel domain 107 219 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2002 Vra-Chr8 37773524 37776988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2002 1 592 B3 DNA Binding Superfamily AT4G30080 56.788 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vra8g2002 B3 2.6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2002 - - gmx:100803053 1068.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2002 8 37773524 37776988 Vra8g2002 8 37773524 37776988 ECH