Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g2001 ATGGTTGGACCTAACTTCATGGATGAGATAGACTGCGGTAGCTTCTTTGACCACATCGACGACCTTCTCGATTTTCCTGTGGAGGAAGTTGAGGGTGGGGCCCCAACCTTGCCCTCCGTCGCCGCCGCCGCCGCCGCCGGAAACTGCAACTCGCTGGCAAGCATCTGGCCCGCCGGGGCCGATTCCTTTCCCGGTTCTGACTCGGTGTTCTCCGGCAACAGCGCTTCGGACCTCTCCGCCGAGCTCTCAGTTCCGTATGAAGACATTTTGCAACTGGAATGGCTGTCGAACTTTGTGGAGGATTCGTTTTGTGGGGGGAGCTTGACCATGAAGAAAGTGGAAGAGCCATCGTGCACCACAAAGGAGGACTCAGTGCACAACCAATTCCACACATCAAGCCCAGTTTCTGTCCTTGAGAGCAGCAGTTCCTGCTCCGTAGGAAAGACGGTGCCGGCGCCGCCACGAAGCCCGGAGGTTTACATCCCTGTGCCATGTGGACGCGCACGCAGCAAGCGTCCACGTCCTGCCACCTTCAATCCTCGGCCAGCCATGAACCTCATTTCCCCTGCCTCGTCCTTTGTCGGGGAGAACATACAACCAAATGTAATTTCGTCGAAGACCTCTTCGGACTCTGAGAATTTTGCCGAGTCTCAACTTGTAGCAAAGATTCCAAAGCAAGGGTGTGGGGAGGCTAAGAAAAAGAAGAAAGTGAAGGTGACAGTTCCTGCAGCTGGCGGTGATAGCAACCAGAATGGATTGCAAGCGGTCAGGAAATGCATGCATTGTGAAATAACGAAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCAAAAACACTATGCAATGCATGTGGTGTTCGTTTCAAGTCTGGGAGGCTCTACCCGGAGTATCGCCCAGCTGCAAGCCCAACCTTTTGTCCGTCTTTGCACTCGAATTCCCACAAGAAGGTGCTGGAAATGAGATGCAGGGGCATTGAGAAATCTGGTTTTGCAATGAATAATAATGCAGCTGCCTCACCCGAACTCATTCCAAACACTAACAGCAGCCTTAGCCTGGAGTACATTTGA 1068 0.5356 MVGPNFMDEIDCGSFFDHIDDLLDFPVEEVEGGAPTLPSVAAAAAAGNCNSLASIWPAGADSFPGSDSVFSGNSASDLSAELSVPYEDILQLEWLSNFVEDSFCGGSLTMKKVEEPSCTTKEDSVHNQFHTSSPVSVLESSSSCSVGKTVPAPPRSPEVYIPVPCGRARSKRPRPATFNPRPAMNLISPASSFVGENIQPNVISSKTSSDSENFAESQLVAKIPKQGCGEAKKKKKVKVTVPAAGGDSNQNGLQAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRFKSGRLYPEYRPAASPTFCPSLHSNSHKKVLEMRCRGIEKSGFAMNNNAAASPELIPNTNSSLSLEYI* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g2001 355 MobiDBLite consensus disorder prediction 163 183 - -
Vra8g2001 355 Pfam GATA zinc finger 259 292 IPR000679 GO:0006355|GO:0043565
Vra8g2001 355 CDD ZnF_GATA 258 305 IPR000679 GO:0006355|GO:0043565
Vra8g2001 355 SMART GATA_3 253 303 IPR000679 GO:0006355|GO:0043565
Vra8g2001 355 PIRSF Txn_fac_GATA_plant 3 346 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vra8g2001 355 PANTHER GATA TRANSCRIPTION FACTOR 8 1 355 - -
Vra8g2001 355 ProSitePatterns GATA-type zinc finger domain. 259 284 IPR000679 GO:0006355|GO:0043565
Vra8g2001 355 ProSiteProfiles GATA-type zinc finger domain profile. 253 289 IPR000679 GO:0006355|GO:0043565
Vra8g2001 355 PANTHER GATA TRANSCRIPTION FACTOR 1 355 - -
Vra8g2001 355 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 257 316 - -
Vra8g2001 355 Gene3D - 254 303 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g2001 Vra-Chr8 37754622 37758319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g2001 19 321 C2C2-Gata Transcription Factor Family AT4G32890 36.013 1.04e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vra8g2001 GATA 1.2e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g2001 - - gmx:100815693 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g2001 8 37754622 37758319 Vra8g2001 8 37754622 37758319 ECH
Vra1g1456 1 22470632 22475626 Vra8g2001 8 37754622 37758319 PCT