Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1996 ATGGCAAGCAAGTGGAAGAAAGCCAAGGTCGCGCTTGGTCTCAACCTCTGCATGTTCGTCCCCAGAACGTTAGACGACGATTCGCCGCCCCACACGGTGGTTTCCGAGCGCCTCTCCGACGCCGCCCTACTATCTCCGGCCAACTGGAACACCAGCTCTTCCCGCCCCACCACGCCGCTTTCCTCTTTTCACGGCTTGAAACTTTCCAAAAGTAGCAGCAAATCCTCCAAGCAAACCTGCTCAATATGCTTAACCAAAATGAAGCAAGGATCCGGCCATGCTATATTCACTGCAGAATGTTCACATTCCTTCCATTTCCACTGCATTGCTTCAAATGTGAAACATGGAAACCAAATATGTCCGGTGTGTAGAGCAAAGTGGAAGGAAATACCCTTATCGGGTCCCAGTTTGGATCCTATTCCTGGCAGAGTTTCACCAAGTCCCATCAATTGGCCCCAAAATGATGCTTTGATGGCAGTGGTCCACCGTCTACCCCTACCTCATCCTCACCGAGATTTAAATAGGAGGCATGTTGTGCCACTTTATCAGGCTTCTGAGCCAGGCATATTTGACGATGATGAATCCTTGAATCATCAAAATGTGTTTTCTGAGCGAAGTCCTTGCATTGAGAATACTGAAGATACTGAGGCTGCTAGAGCTATAGAGATTAAAACATTCCCAGAAGTATCTGCTGCTCTGGGATCCAAAACTCATTCTAACTTCACAGTTTTGGTTCATCTCAAAGCTGCTGCTTCCGCAGATACAGCTGCAGTTAAAAGACAAAACCTTAGTAGAAACCAGGCAAACTTGGCACAGATTTCTCAGACTCCACGTGCCCCTGTCGACTTGGTCACAGTGCTTGATGTGAGTGGTAGCATGGCTGGAACTAAGCTTGCACTACTCAAAAGAGCAATGGGGTTTGTCATACAGAACCTGGGCTCTAATGACCGACTCTCTGTTATTGCCTTTTCTTCCACAGCTCGCCGCCTCTTTCCTTTGTGCAGAATGACTGATTCTGGGCGACAGCAGGCACTGCAAGCTGTTAATTCTTTGGTTGCAAATGGTGGTACCAATATCGCAGAAGGGCTGAGAAAAGGTGCCAAGATAATGGAAGATCGAAAGGAAAAGAATCCAGTTGCCAGTATTATCCTGCTGTCCGATGGTCAAGATAATTACACTGTCAATGGCTCTGGAACTAACCAGCCTCAACCAAATTACCAGTTTCTTCTGCCCACTTCTATCAGTGGTGATGATAGTTCAGGATTTCAAATTCCTGTGCATGCTTTTGGATTTGGTGCAGATCACGATGCTTCACTGATGCACTCCATTTCAGAGATTTCTGGTGGCACATTTTCATTCATTGAGACTGAAGCCGTATTACAGGATGCGTTTGCACAATGCATTGGAGGACTTCTGAGCGTAGTTGTTCAGGAGCTTCAAGTGGGAATTGAGTGTATACACCCAAATCTCAGTCTTGTCTCACTAAAAGCAGGAAGTTACCCAACCCGTGTGGTGGCGGATGGACGCAAAGGATTGATTGAAGTCGGAGACCTGTATGCCGATGAAGAGAGAGATTTTCTAGTGTCAGTTAATGTCCCTGCTGCATCTGGCAATGAAACATCATTGATAAAGGTGAAATGTGTATACAAGGATCCCTTAACTCAGGAAACGGCAACAATAGAAAGTGAGGAAGTTAAGATTAAGCGGACAGAAATCTCTGGGCAGGTAGTAATGTCACTTGAAGTGGACAGACAGCGGAACAGGCTCCAAGCAGCCGAGGCAATGGCCCAGGCTCGTGTTGCAGCTGAACGGGGGGACCTAAGTGGAGCAATATTAATTCTTGAAAACTTTAGAAAGATGCTCTCGGAGACTGTTTCGGCGAAATCGAACGATCGCCTATGTGTTGCATTAGATGCTGAGCTTAAGGAAATGCAAGAGCGGATGGCGAGTAGACATGTGTATGAAGCATCTGGGAGAGCATATATACTTTCTGGATTGAGTTCACATTCATGGCAAAGAGCAACAGCAAGAGGTGATTCCACTGATAGGTCGAGTCTTGTTCAGGCATATCAGACACCATCAATGGCTGAGATGCTTACTCGATCTCAGGCCACGTTACTAGGTAGTCCATCAGGGCAGAGGCTTCTCCAGCCTCTGTTGTCAGTCAGATCACAACCAAGCCCACGGTGA 2190 0.4694 MASKWKKAKVALGLNLCMFVPRTLDDDSPPHTVVSERLSDAALLSPANWNTSSSRPTTPLSSFHGLKLSKSSSKSSKQTCSICLTKMKQGSGHAIFTAECSHSFHFHCIASNVKHGNQICPVCRAKWKEIPLSGPSLDPIPGRVSPSPINWPQNDALMAVVHRLPLPHPHRDLNRRHVVPLYQASEPGIFDDDESLNHQNVFSERSPCIENTEDTEAARAIEIKTFPEVSAALGSKTHSNFTVLVHLKAAASADTAAVKRQNLSRNQANLAQISQTPRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQNLGSNDRLSVIAFSSTARRLFPLCRMTDSGRQQALQAVNSLVANGGTNIAEGLRKGAKIMEDRKEKNPVASIILLSDGQDNYTVNGSGTNQPQPNYQFLLPTSISGDDSSGFQIPVHAFGFGADHDASLMHSISEISGGTFSFIETEAVLQDAFAQCIGGLLSVVVQELQVGIECIHPNLSLVSLKAGSYPTRVVADGRKGLIEVGDLYADEERDFLVSVNVPAASGNETSLIKVKCVYKDPLTQETATIESEEVKIKRTEISGQVVMSLEVDRQRNRLQAAEAMAQARVAAERGDLSGAILILENFRKMLSETVSAKSNDRLCVALDAELKEMQERMASRHVYEASGRAYILSGLSSHSWQRATARGDSTDRSSLVQAYQTPSMAEMLTRSQATLLGSPSGQRLLQPLLSVRSQPSPR* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1996 729 SMART ring_2 80 123 IPR001841 -
Vra8g1996 729 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 131 IPR013083 -
Vra8g1996 729 ProSiteProfiles Zinc finger RING-type profile. 80 124 IPR001841 -
Vra8g1996 729 Pfam Ring finger domain 79 124 IPR001841 -
Vra8g1996 729 ProSiteProfiles VWFA domain profile. 282 468 IPR002035 -
Vra8g1996 729 CDD vWA_C3HC4_type 281 455 - -
Vra8g1996 729 Pfam von Willebrand factor type A domain 282 465 IPR002035 -
Vra8g1996 729 CDD RING-H2 80 124 - -
Vra8g1996 729 Gene3D von Willebrand factor, type A domain 282 469 IPR036465 -
Vra8g1996 729 PANTHER OS10G0464500 PROTEIN 3 725 - -
Vra8g1996 729 SUPERFAMILY RING/U-box 76 130 - -
Vra8g1996 729 Pfam VWA / Hh protein intein-like 631 703 IPR032838 -
Vra8g1996 729 SUPERFAMILY vWA-like 277 468 IPR036465 -
Vra8g1996 729 SMART VWA_4 280 467 IPR002035 -
Vra8g1996 729 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 725 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1996 Vra-Chr8 37706650 37711183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1996 69 124 C3H Transcription Factor Family AT1G57730 41.071 9.34e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1996 - - gmx:100813569 1281.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1996 8 37706650 37711183 Vra8g1996 8 37706650 37711183 ECH