Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1994 ATGGAACGTTCAAAGGAAAAGTGTGAGAACGGAAATGGTTACAGTAACAGTGACCCACTTAACTGGGGCATGGCTGCCGATGCTTTGAGAGGTAGCCACCTTGAGGAGGTGAAGCGCATGGTGGAGGAATACCGTAACCCCGTGGTGACGGTAGGTGGGAAGAGCCTCACCGTCTCTCAGGTGGCGGCGGTTGCTATCCGCGGCGTGAGGGTGGAGCTGGCGGAGGAAGCCCGGCATGGTGTAAACGGCAGCAGTGATTGGGTGACTAAAAGTTTGGCGAACGGCGTTGATACGTATGGGATCACCACAGGCTTCGGTGGAACCTCCTACAGGAGAACCAACCAAGGTGTTGCTCTCCAAAACGAACTCATCAGATTTTTAAATGCTGGCATTTTTGGCAATGATAAGGAATCTTGTCACACTTTACCTCAATCAACTACAAGAGCATCCATGTTGGTTAGGATCAACACCTTGCTTCAAGGATATTCAGGCATAAGATTTGAAATCATGGAGGTCATAGCCAAGTTTTTGAACCATAACATAACTCCTTGTCTCCCACTACGTGGCTCAATCACTGCATCGGGTGATATAATTCCTTTATCATATGTTGTTAGTCTCTTAATTGGTAGGACAAACTCCAAGTCTATTGGACCTAATGGAGAAGTTCTTAATGCTAGAGAGGCCTTTCAATTAGCAGGAATTGATGGTGGTTTCTTTCAGTTGCAACCTAAAGAGGGTTTAGCATTAGTAAATGGAACTGCAGTTGGATCTGGCTTAGCTTCCATAGTTCTTTTTGAAGCAAACTTACTTGTCATCCTCTCAGAAGTCTTGGTTGCAATTTTTGTTGAAGTTATGCATGGAAAACCAGAATTCACAGATCATTTAATTCATAAATTGAAGCACCACCCTGGCCAAATTGAGGCTGCAGCCATAATGGAGCATATATTGGATGGAAGTTCATTTATTAAGGAAGCACAAAAGTTTAATGAAATTGACCCACTTCAAAAGCTTAAACAAGATAGGTATGCTCTCAGAACATCACCTCAATGGCTTGGACCACAAATTGAAGTAATCAGACATGCAACAAAGATGATTGAAAGGGAGATAAACTCTGTAAATGACAACCCGTTGATTGATGTTTCAAGGAATAAGGCACTTCATTGTGGGAATTTCCAAGGTACCCCAATTGGTGTTTCAATGGATAACACTCGTTTGGCCATAGCAGCAATTGGAAAACTTATGTTTGCCCAATTCACTGAACTTGTGAATGACTTATACAATAATGGTTTGCCTTCAAGTTTAGCTGCTAGTCACAACCCAAGCTTAGATTATGGTTTCAAAGGAGCAGAAGTTGCAATGGCGTCTTACTGTTCAGAACTTCAATACCTGGCAAATCCTGTCACAACTCATATGCAGAGTACGGAGCAACATAACCAAGGGGTGAACTCGTTAGGATTAATTTCTTCAAGAAAGACAGCTGAAGCATTAGACATCTTAAAGCTCATGTCTTCCACTTTTTTAGTTGCATTATGTCAAGCAATTGATCTACGACATCTAGAGCAAAACTTGAAGAACACTGTGAAGAATATTGTGACTCAAGTGGCAAAAAAAACTCTCACAATTGACATTAATCATGAGGACTTGCTTAAAATTGTTGATGGTGAGCATGTGTTTGCTTATATTGATGATCCTTGTAGGACAACCTACCCTCTGATGCAAAAGTTGAGGTTAGTCCTAATTGATCACGCATTACAAAATGGTGACAAAGTGACAAGTTTAAGTTCTTCAATTTTTCAAAAGATAAGTGCTTTTGAGGAAGAACTCAAAGTAGTTTTTCCAAAGGAGGTGGAAAGTACTAGGATTGAAATTGAGAATGAAAATCCAGCTATTCCTAATCGAATTAAAAAATGTAGATCTTATTCATTATATAAGTTTGTGAGAGACACTTTGGGCACAAAGTTACTAACAGGCGAAAAAGTAACATCACCTGGTGAAGAATGTAACAAAGTATTTGTTGCATTGTGTGAAGGAAAATTTATTGATCCTATGTTGAATTGTCTAAAAGAGTGGAATGGAACACCATTACCAGTGTGA 2094 0.4045 MERSKEKCENGNGYSNSDPLNWGMAADALRGSHLEEVKRMVEEYRNPVVTVGGKSLTVSQVAAVAIRGVRVELAEEARHGVNGSSDWVTKSLANGVDTYGITTGFGGTSYRRTNQGVALQNELIRFLNAGIFGNDKESCHTLPQSTTRASMLVRINTLLQGYSGIRFEIMEVIAKFLNHNITPCLPLRGSITASGDIIPLSYVVSLLIGRTNSKSIGPNGEVLNAREAFQLAGIDGGFFQLQPKEGLALVNGTAVGSGLASIVLFEANLLVILSEVLVAIFVEVMHGKPEFTDHLIHKLKHHPGQIEAAAIMEHILDGSSFIKEAQKFNEIDPLQKLKQDRYALRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNKALHCGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFTELVNDLYNNGLPSSLAASHNPSLDYGFKGAEVAMASYCSELQYLANPVTTHMQSTEQHNQGVNSLGLISSRKTAEALDILKLMSSTFLVALCQAIDLRHLEQNLKNTVKNIVTQVAKKTLTIDINHEDLLKIVDGEHVFAYIDDPCRTTYPLMQKLRLVLIDHALQNGDKVTSLSSSIFQKISAFEEELKVVFPKEVESTRIEIENENPAIPNRIKKCRSYSLYKFVRDTLGTKLLTGEKVTSPGEECNKVFVALCEGKFIDPMLNCLKEWNGTPLPV* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1994 697 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 18 688 IPR005922 GO:0005737|GO:0006559|GO:0016841
Vra8g1994 697 SUPERFAMILY L-aspartase-like 18 696 IPR008948 GO:0003824
Vra8g1994 697 CDD PAL-HAL 54 517 IPR001106 -
Vra8g1994 697 Gene3D Fumarase/aspartase (Central domain) 254 692 - -
Vra8g1994 697 Gene3D - 10 253 IPR024083 -
Vra8g1994 697 Gene3D - 520 632 IPR023144 -
Vra8g1994 697 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 10 697 - -
Vra8g1994 697 PANTHER HISTIDINE AMMONIA-LYASE 10 697 IPR001106 -
Vra8g1994 697 Pfam Aromatic amino acid lyase 56 532 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1994 Vra-Chr8 37668914 37675780 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1994 17 697 Monolignol Biosynthesis Gene Families AT3G53260 74.277 0.0 1095
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1994 K10775 - gmx:100818777 1145.95