Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra8g1993 ATGGAATATTCCAATGGAAACCACACCAATGCCAATGCTTCGTTCAACCTTTGCAATGGACCCAGCGACCCACTTAACTGGGGCAAGGCTGCAGAAGCTCTGAAAGGTAGCCACCTTGACGAGGTGAAGCGCATGGTGGAGGAGTACCGTAACCCCTTGGTGACATTAGGTGGGAAGACCCTCACCGTGTCTCAGGTGGCGGCGGTTGCCACCTGTCATGCCCCTGGCGTCACGGTGGAGCTGGCGGGGGAGAGCCGGCGGGGAGTGAATGCCAGCAGTGATTGGGTGATTGATAGCATGAGCAGAGGCACTGATAGCTACGGGGTCACCACGGGCTTCGGTGCAACCTCACACAGGAGAACCAAGCAAGGAGGTGCCCTCCAAAACGAACTCATCAGATTTTTGAATGCCGGCATTTTTGGTAATGGTACAGAGGCTTCTCATACATTACCTTATTCATCTACAAGGGCAGCTATGTTGGTTAGGGTTAACACTTTGCTTCAAGGATATTCAGGCATTAGGTTCGAAATTATGGAGGCTATTACCAAGTTTTTAAATCACAACATAACTCCATGTCTTCCACTACGTGGTACAATCACTGCATCAGGTGACTTGGTTCCTTTATCCTATGTTGCTGGTCTTTTAATTGGAAGACCAAACTCCAAGTCAATTGGACCCAATGGAGAAGTACTCAATGCTAAAGATGCCTTTAAATTAGCTGGAATTGATGGAGGTTTCTTTGAGTTGCAACCTAAAGAGGGTCTGGCACTGGTCAATGGCACTGCAGTGGGATCTGGCTTGGCTTCCATCGTTCTTTTTGAGGCAAACTTACTTGTTGTTCTTTGTGAAGTTTTGTCTGCAATCTTTGCTGAAGTTATGCAAGGAAAACCAGAATTCACAGACCACTTGACTCATAAATTGAAGCATCACCCTGGTCAAATTGAGGCTGCTGCTATAATGGAACACATACTAGATGGAAGCTCATACATTAAGGAAGCCCGAAAGTTACATGAGATTGATCCACTTCAAAAGCCAAAACAAGATAGGTATGCTCTCAGAACGTCTCCTCAATGGCTTGGACCACAAATTGAAGTAATCAGACATGCAACTAAGATGATTGAAAGAGAGATAAACTCTGTTAATGATAACCCCTTGATCGATGTTTCAAGGAACAAGGCACTTCATGGGGGGAATTTCCAAGGTACCCCAATTGGTGTTTCAATGGATAACACCCGTTTGGCCATTGCATCAATTGGGAAGCTTATGTTTGCCCAGTTTTCTGAACTTGTGAATGACTTGTACAATAATGGTTTACCTTCAAATCTAACAGCTGGTCGCAATCCAAGCTTAGATTATGGATTCAAAGGAGCTGAAATAGCAATGGCATCATACTGTTCAGAACTTCAGTATCTGGCCAACCCTGTCACTAATCATGTGCAGAGTGCTGAGCAACATAACCAAGATGTCAATTCCTTAGGCTTGGTTTCCTCAAGAAAGACTGCTGAAGCAGTAGAAATATTAAAGCTCATGTCTTCCACTTACTTAGTTGCACTGTGTCAAGCCATTGACTTGAGACATTTGGAAGAAAACATGAAGAACGCAGTTAAGAATGCTGTGAGTCAAGTGGCCAAAAGAGTTCTCACAACTGGCATGAATGGTGAGTTACACCCTTCTAGATTCTGTGAGAAGGACTTGCTTAAAATTGTTGATCATGAATATGTCTTTGCTTACATTGATGACCCCTGTAGTGTAACATACCCTTTGATGCAAAAGTTGAGATCAGTTCTGGTTGATCATGCAATGCAAAACGGTGAGAAAGAGGGAAATTTAAGTAGCTCAATTTTCCATAAGATAAGAGCCTTTGAGGAAGAACTGATAGCCCTTTTGCCGAAGGAGGTAGAAAATGGTAGGATTGAAGCTGAGAATGGAAATTCAAGTATTCCTAACAGAATTAAAGAATGCAGATCTTACCCATTATATAAGTTTGTGAGAGAAAGCTTGAGTACAAGTTTGCTAACAGGGGAGAAGGTGAAGTCACCTGGTGAGGAATGTGACAAGGTTTTTACTGCATTATGTGAAGGAAAGTTTATTGATCCAATGCTGGATTGTCTAAAGAACTGGAATGGTTCTCCTCTACCAATATCCTAA 2148 0.433 MEYSNGNHTNANASFNLCNGPSDPLNWGKAAEALKGSHLDEVKRMVEEYRNPLVTLGGKTLTVSQVAAVATCHAPGVTVELAGESRRGVNASSDWVIDSMSRGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGNGTEASHTLPYSSTRAAMLVRVNTLLQGYSGIRFEIMEAITKFLNHNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSIGPNGEVLNAKDAFKLAGIDGGFFELQPKEGLALVNGTAVGSGLASIVLFEANLLVVLCEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYIKEARKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRHATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDLYNNGLPSNLTAGRNPSLDYGFKGAEIAMASYCSELQYLANPVTNHVQSAEQHNQDVNSLGLVSSRKTAEAVEILKLMSSTYLVALCQAIDLRHLEENMKNAVKNAVSQVAKRVLTTGMNGELHPSRFCEKDLLKIVDHEYVFAYIDDPCSVTYPLMQKLRSVLVDHAMQNGEKEGNLSSSIFHKIRAFEEELIALLPKEVENGRIEAENGNSSIPNRIKECRSYPLYKFVRESLSTSLLTGEKVKSPGEECDKVFTALCEGKFIDPMLDCLKNWNGSPLPIS* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra8g1993 715 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 23 705 IPR005922 GO:0005737|GO:0006559|GO:0016841
Vra8g1993 715 Pfam Aromatic amino acid lyase 61 541 IPR001106 -
Vra8g1993 715 PANTHER HISTIDINE AMMONIA-LYASE 11 714 IPR001106 -
Vra8g1993 715 SUPERFAMILY L-aspartase-like 23 714 IPR008948 GO:0003824
Vra8g1993 715 CDD PAL-HAL 59 525 IPR001106 -
Vra8g1993 715 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 11 714 - -
Vra8g1993 715 Gene3D Fumarase/aspartase (Central domain) 262 709 - -
Vra8g1993 715 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 197 213 IPR022313 GO:0016841
Vra8g1993 715 Gene3D - 528 649 IPR023144 -
Vra8g1993 715 Gene3D - 16 261 IPR024083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra8g1993 Vra-Chr8 37661652 37666653 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra8g1993 16 714 Monolignol Biosynthesis Gene Families AT2G37040 80.401 0.0 1192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra8g1993 K10775 - gmx:100801470 1273.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra8g1993 8 37661652 37666653 Vra8g1993 8 37661652 37666653 ECH